View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_23 (Length: 327)
Name: NF5565_low_23
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 35204016 - 35204325
Alignment:
| Q |
1 |
attgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatggtgtggaactgtatgtggg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204016 |
attgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatggtgtggaactgtatgtggg |
35204115 |
T |
|
| Q |
101 |
ctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204116 |
ctatgatagtctggctcaaaactgttacacacaataggaattaagctgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatc |
35204215 |
T |
|
| Q |
201 |
tatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatattttcttggttccaacttccaatattca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204216 |
tatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatattttcttggttccaacttccaatattca |
35204315 |
T |
|
| Q |
301 |
tactcctatt |
310 |
Q |
| |
|
|||||||||| |
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|
| T |
35204316 |
tactcctatt |
35204325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 55859610 - 55859312
Alignment:
| Q |
1 |
attgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatggtgtggaactgtatgtggg |
100 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55859610 |
attgctattgttttattattatctactttagacaagatcacgttagagagtagtactaccaagcatatagatcctgaaatggtgtggaactgtatgtggg |
55859511 |
T |
|
| Q |
101 |
ctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55859510 |
ctatggtagtctggctcaaaactgttacacacaataagaattaagctgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatc |
55859411 |
T |
|
| Q |
201 |
tatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatattttcttggttccaacttccaatattca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| | |||||||||||||||||||| ||| |||||||| |
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|
| T |
55859410 |
tatattcaattcaggtgcctagaaaccatagtgctagg----tgacaggtttcatc----aacattgatatattttcttggttccaatttcaaatattca |
55859319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 29274988 - 29275286
Alignment:
| Q |
1 |
attgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatggtgtggaactgtatgtggg |
100 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29274988 |
attgctattgttttattattatctactttagacaagatcacgttagagagtagtactaccaagcatatagatcctgaaatggtgtggaactgtatgtggg |
29275087 |
T |
|
| Q |
101 |
ctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatcatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
29275088 |
ctatggtagtctggctcaaaactgttacacacaataggaattaagctgcaagactcaaacttatatgttgtcatttagtggcaaggaacatttcatcatc |
29275187 |
T |
|
| Q |
201 |
tatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatattttcttggttccaacttccaatattca |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||| | |||| |||| |||||||||| ||| |||||||| |
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|
| T |
29275188 |
tatattcaattcaggtgactagaaaccatagtgctagg----tgacaggtttcatcaacata----gatatttttttttggttccaatttcaaatattca |
29275279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 3822415 - 3822715
Alignment:
| Q |
1 |
attgctattattttgttattatctactttagacaagatcacgttaaagagtagtactaccaagcatatagatcctgaaatggtgtggaa-ctgtatgtgg |
99 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3822415 |
attgctattgttttgtgattatctactttagacaagctcacgttagagagtagtactgccaagcatatagatcctgaaatggtgtggaaactgtatgtgg |
3822514 |
T |
|
| Q |
100 |
gctatgatagtctggctcaaaactgttacacacaatagg-aattaaactgcaagactcaaacttatatgttgtcatttagtggcagggaacatttcatca |
198 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||| | |||| |
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|
| T |
3822515 |
gctatggtagtctggctcaaaactattacacacaatagggaattaagctgcatgactcaaacttatatgctgtcatttagtggcagggaacatattatca |
3822614 |
T |
|
| Q |
199 |
tctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacactcatatattttcttggttccaacttccaatatt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| |||| | |||||||||||||||||||| ||| |||||| |
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|
| T |
3822615 |
tctatattcaattcaggtgcctagaaactatagtgctagg----tgacaggtttcatc----aacattgatatattttcttggttccaatttctaatatt |
3822706 |
T |
|
| Q |
299 |
catactcct |
307 |
Q |
| |
|
||||||||| |
|
|
| T |
3822707 |
catactcct |
3822715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 46267515 - 46267346
Alignment:
| Q |
70 |
gatcctgaaatggtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgtt |
169 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
46267515 |
gatcctgaaatggtgtggaactgtacgtggactatgatagtctggctcaaa-ctgttacacacaataggaattaagctgcaagactcaaacttatatgtt |
46267417 |
T |
|
| Q |
170 |
gtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
46267416 |
gtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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