View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_24 (Length: 326)
Name: NF5565_low_24
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 39299941 - 39300251
Alignment:
| Q |
1 |
caaaccttcacctctttctttcatgccttctgcaccttgtctgtgtccaactacatttgtagcatgatgacgatccctctcactctgtttcacattttga |
100 |
Q |
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| T |
39299941 |
caaaccttcacctctttctttcatgccttctgcaccttgtctgtgtccaactacatttgtagcatgatgacgatccctctcactctgtttcacattttga |
39300040 |
T |
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| Q |
101 |
tcagagtgagactgaaaaccttgtttgtgtccaaggttggtagcagcagcatgatgatgatccctatcactctgcttcacatttgaaccaagttcatgag |
200 |
Q |
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| T |
39300041 |
tcagagtgagactgaaaaccttgcttgtgaccaaggttcgtagcagcagcatgatgatgatccctatcactctgcttcacatttgaaccaagttcatgag |
39300140 |
T |
|
| Q |
201 |
tctctcttgatcttcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300141 |
tctctcttgatcttcctcttccaccaatatctccaatggcttttcctgcatgatctttgttcatttcaccaccttgtaatgcttcaatgctaccatgtgg |
39300240 |
T |
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| Q |
301 |
tggttccttgt |
311 |
Q |
| |
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||||||||||| |
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| T |
39300241 |
tggttccttgt |
39300251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 39299888 - 39299940
Alignment:
| Q |
182 |
tttgaaccaagttcatgagtctctcttgatcttcctcttccaccaatatctcc |
234 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39299888 |
tttgaaccaagttcatggctctctctttctcttcctcttccaccaatatctcc |
39299940 |
T |
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