View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_low_25 (Length: 312)

Name: NF5565_low_25
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_low_25
NF5565_low_25
[»] chr3 (1 HSPs)
chr3 (1-291)||(31041525-31041815)
[»] chr1 (3 HSPs)
chr1 (86-181)||(6556605-6556700)
chr1 (98-183)||(4949036-4949121)
chr1 (154-183)||(48466041-48466070)
[»] chr2 (2 HSPs)
chr2 (143-184)||(39616012-39616053)
chr2 (86-184)||(7335729-7335827)
[»] chr4 (1 HSPs)
chr4 (123-183)||(181723-181783)
[»] chr8 (2 HSPs)
chr8 (122-188)||(34296066-34296130)
chr8 (112-184)||(32659793-32659865)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 31041815 - 31041525
Alignment:
Q  1 ccaaacgtgtctctgattttgtagggtgttcttgaatatgtcattgtattataagttatttnnnnnnngtctctgatttttatgctttaatcatatcagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  31041815 ccaaacgtgtctctgattttgtagggtgttcttgaatatgtcattgtattataagttatttaaaaaaagtctctgatttttatgctttaatcatatcagt 31041716  T
Q  101 ccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataatgactgatttagaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041715 ccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataatgactgatttagaata 31041616  T
Q  201 agtggttacacatatggagcagtttaatagtacactagagttgaagacctatcaaaaagaatacactatcaatttgatccctggatcgtca 291  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041615 agtggttacacatatggaccagtttaatagtacactagagttgaagacctatcaaaaagaatacactatcaatttgatccctggatcgtca 31041525  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 6556700 - 6556605
Alignment:
Q  86 tttaatcatatcagtccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaata 181  Q
    |||| |||||| |||| ||| || | |||| |||| ||||||||||||| ||| |  ||||||||| ||| || ||||||||||||||||||||||    
T  6556700 tttactcatattagtcattccgagagtatgctagagactaaattgatagtaagcggttaaatataaaaaccaagttgatagtaagttgttaaaata 6556605  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 4949121 - 4949036
Alignment:
Q  98 agtccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatata 183  Q
    |||||||| |||||||||||||| |||||||||| || ||| |  ||||||||   || ||||| ||||||| |||||||||||||    
T  4949121 agtccttctgacaatatgttagagactaaattgagagtaagtggttaaatatagagacgaaattaatagtaaattgttaaaatata 4949036  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 48466070 - 48466041
Alignment:
Q  154 actaaattgatagtaagttgttaaaatata 183  Q
    ||||||||||||||||||||||||||||||    
T  48466070 actaaattgatagtaagttgttaaaatata 48466041  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 39616053 - 39616012
Alignment:
Q  143 taaatataataactaaattgatagtaagttgttaaaatataa 184  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  39616053 taaatataataaccaaattgatagtaaattgttaaaatataa 39616012  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 7335827 - 7335729
Alignment:
Q  86 tttaatcatatcagtccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataa 184  Q
    ||||||| ||| |||| ||| ||||| ||||||  |||||||||| ||| |||    ||||||||| ||| ||||||||| || |||||||||||||||    
T  7335827 tttaatcctattagtctttctgacaacatgttatgaactaaattgttagcaagttgttaaatataagaaccaaattgataataggttgttaaaatataa 7335729  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 181723 - 181783
Alignment:
Q  123 ctaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatata 183  Q
    |||||||||||| ||| || ||||||||  ||  |||||||||||||||||||||||||||    
T  181723 ctaaattgatagaaagtgattaaatataggaatcaaattgatagtaagttgttaaaatata 181783  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 34296130 - 34296066
Alignment:
Q  122 actaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataatgac 188  Q
    ||||||||||||| |||||  ||||| ||| ||  ||||||||||||||||||||||||||| ||||    
T  34296130 actaaattgatagtaaggg--taaatgtaagaatcaaattgatagtaagttgttaaaatatagtgac 34296066  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 32659865 - 32659793
Alignment:
Q  112 tatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataa 184  Q
    |||||||| ||||||||||||||  ||||  |||| |||   || || |||||||||||||||||||||||||    
T  32659865 tatgttaggaactaaattgatagtgaggggttaaacatagagaccaagttgatagtaagttgttaaaatataa 32659793  T

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