View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_low_28 (Length: 296)

Name: NF5565_low_28
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_low_28
NF5565_low_28
[»] chr6 (14 HSPs)
chr6 (13-176)||(29845973-29846136)
chr6 (13-176)||(29843496-29843659)
chr6 (13-140)||(29826482-29826609)
chr6 (177-252)||(29845872-29845947)
chr6 (177-252)||(29843395-29843470)
chr6 (177-252)||(29826685-29826760)
chr6 (247-296)||(28150730-28150780)
chr6 (252-296)||(29827549-29827594)
chr6 (248-292)||(29842570-29842615)
chr6 (252-296)||(28097026-28097071)
chr6 (60-118)||(28243341-28243399)
chr6 (60-109)||(28150445-28150494)
chr6 (65-141)||(28181668-28181744)
chr6 (60-124)||(28326024-28326088)
[»] scaffold0237 (2 HSPs)
scaffold0237 (19-176)||(2178-2335)
scaffold0237 (177-252)||(2077-2152)
[»] chr5 (1 HSPs)
chr5 (209-252)||(17790839-17790882)
[»] scaffold0038 (2 HSPs)
scaffold0038 (60-118)||(43503-43561)
scaffold0038 (60-124)||(117339-117403)
[»] chr2 (1 HSPs)
chr2 (254-293)||(3281218-3281258)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 29846136 - 29845973
Alignment:
Q  13 aaaataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846136 aaaataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtg 29846037  T
Q  113 aagataatcaaagaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29846036 aagataatcaaagaagtttccaaaaagatttaccgttgcggattaccctgttggaaccgaatat 29845973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 29843659 - 29843496
Alignment:
Q  13 aaaataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtg 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  29843659 aaaataaaaatataattatcaatacatagatacgattattaaacatctactaaaacttatctcaacgggcaagaatgaatatgaatacgagtttattgtg 29843560  T
Q  113 aagataatcaaagaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 176  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29843559 aagataatcaaagaagtttccaaaaagatttacaattgcggattaccctgttggaaccgaatat 29843496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 29826482 - 29826609
Alignment:
Q  13 aaaataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtg 112  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29826482 aaaataaaaatataattatcaatacataaatacaattattaaacatctagtcaaacttatctcatcgagcaggaatgaatatgaatacgagtttattgtg 29826581  T
Q  113 aagataatcaaagaagtttccaaaaaga 140  Q
    |||||| |||||||||||||||| ||||    
T  29826582 aagatagtcaaagaagtttccaacaaga 29826609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 29845947 - 29845872
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29845947 ttttagatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 29845872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 29843470 - 29843395
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29843470 tttttgatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 29843395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 29826685 - 29826760
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29826685 ttttagatacaaaatttgacgatcgagtccagatggtggggatttatggaattggcggattgggtaaaacaacact 29826760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 28150730 - 28150780
Alignment:
Q  247 aacactacatgacttgatagaag-catgggtaaagaaattgtacgacaaga 296  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  28150730 aacattacatgacttgatagaagacatgggtaaagaaattgtacgacaaga 28150780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 29827549 - 29827594
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaaga 296  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  29827549 tacatgacttgatagaagacatgggtaaagaaattgtacgacaaga 29827594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 29842615 - 29842570
Alignment:
Q  248 acactacatgacttgatagaag-catgggtaaagaaattgtacgac 292  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  29842615 acactacatgacttgatagaagacatgggtaaagaaattgtacgac 29842570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 28097071 - 28097026
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaaga 296  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  28097071 tacatgacttgatagaagacatgggtaaagaaattgtaagacaaga 28097026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 28243341 - 28243399
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 118  Q
    |||| |||||||| | || ||| ||||||| |||||||||||||||||||| |||||||    
T  28243341 tactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagata 28243399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 28150445 - 28150494
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttatt 109  Q
    |||| |||||||||| || ||||||||||| |||||||| ||||||||||    
T  28150445 tactcaaacttatcttattgggcaggaatggatatgaattcgagtttatt 28150494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 28181668 - 28181744
Alignment:
Q  65 aaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaagaagtttccaaaaagat 141  Q
    |||||||| | || ||| ||||||| ||||||||| |||||||| |  |||||| ||||| | ||||||||||||||    
T  28181668 aaacttatttgattgggtaggaatggatatgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagat 28181744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 28326024 - 28326088
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaa 124  Q
    |||| |||||||| | || ||| |||||||  ||||||||||||||||||| ||||||| |||||    
T  28326024 tactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaa 28326088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 2335 - 2178
Alignment:
Q  19 aaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2335 aaaatataattatcaatacatagatacgattattaaacatctactaaaacttatctcaacgggcaagaatgaatatgaatacgagtttattgtgaagata 2236  T
Q  119 atcaaagaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 176  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2235 atcaaagaagtttccaaaaagatttaccgttgcggattaccctgttggaaccgaatat 2178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 2152 - 2077
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152 ttttagatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 2077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 17790839 - 17790882
Alignment:
Q  209 atggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    |||||||||||||||||||| ||||| || ||||||||||||||    
T  17790839 atggtggggatttatggaatgggtgggttaggtaaaacaacact 17790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 43503 - 43561
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 118  Q
    |||| |||||||| | || ||| ||||||| |||||||||||||||||||| |||||||    
T  43503 tactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagata 43561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 117339 - 117403
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaa 124  Q
    |||| |||||||| | || ||| |||||||  ||||||||||||||||||| ||||||| |||||    
T  117339 tactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaa 117403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 3281218 - 3281258
Alignment:
Q  254 catgacttgatagaag-catgggtaaagaaattgtacgaca 293  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  3281218 catgacttgatagaagacatgggtaaagaaattgtaagaca 3281258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University