View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_29 (Length: 293)
Name: NF5565_low_29
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 5522355 - 5522548
Alignment:
| Q |
86 |
taaacattcaatcttcaaactcttgaattactatttcccctttagtcttcttgatgattccaagctgactcatcctgcaaaaagcaactttcaccttgtt |
185 |
Q |
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| T |
5522355 |
taaacattcaatcttcaaactcttgaattactatttcccctttagtcttcatgatgattccaagctgactcatcctgcaagaagaaactttcaccttgtt |
5522454 |
T |
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| Q |
186 |
tccttttaaccatatatatacacccatttagaatacaagaatttatcaaccaaaatcacaagagctcttcaatacttctcacaagctagttttt |
279 |
Q |
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| T |
5522455 |
tccttttaaccatatatatacacccatttagaatacaagaatttatcaaccaaaatcacaagagctcttcaatacttctcacaagctagttttt |
5522548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 5522220 - 5522292
Alignment:
| Q |
20 |
ttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgttttgtcataaacat |
92 |
Q |
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| T |
5522220 |
ttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgtttggtcataaacat |
5522292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 51766621 - 51766523
Alignment:
| Q |
11 |
cagagaggcttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgttttgtcataaacattcaatcttcaaactctt |
109 |
Q |
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| T |
51766621 |
cagaaaggcttaattccagctcacaaaggtgtaatgactcccttttattagtgtcaaccaaagtatgttttgtcataaacattcaatcttcaaactctt |
51766523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 51754503 - 51754391
Alignment:
| Q |
126 |
tttagtcttcttgatgattccaagctgactcatcctgcaaaaag-caactttcaccttgtttccttttaaccatatatatacacccatttagaatacaag |
224 |
Q |
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| T |
51754503 |
tttagtcttcatgatgatcccaggctgactcatcctacaaaaggtcaacagtcacattgtttccttctaaccatatatat--acccctttaggatacaag |
51754406 |
T |
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| Q |
225 |
aatttatcaaccaaa |
239 |
Q |
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| T |
51754405 |
gattcatccaccaaa |
51754391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 51754673 - 51754641
Alignment:
| Q |
60 |
agtgtcaaccaaagtatgttttgtcataaacat |
92 |
Q |
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| T |
51754673 |
agtgtcaaccaaagtatgttttgtcataaacat |
51754641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 51754736 - 51754688
Alignment:
| Q |
16 |
aggcttaattccagctcacaaaggtgtaatgactcccttttattagtgt |
64 |
Q |
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| T |
51754736 |
aggcttaattccagctcacaatgctttaattactcccttttatcagtgt |
51754688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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