View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_3 (Length: 601)
Name: NF5565_low_3
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 43657956 - 43658408
Alignment:
| Q |
1 |
agaggtgatgttttttaattctatcacaaaatcatggcataattttccatctatggaatatgctagatatcttcccgtgttaggagtcactgaggatcat |
100 |
Q |
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| T |
43657956 |
agaggtgatgttttttaattctatcacaaaatcatggcataatatgccatctatggaatatgctagatatcttcccgtgttaggagtcactgaggatcat |
43658055 |
T |
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| Q |
101 |
gttattccttacaagtgttcatcttatattaatagaaaggaatatgttagacaaagaagaagtgagcattcaactttaagcttaaagggcattaaaaaat |
200 |
Q |
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| T |
43658056 |
gttattccttacaagtgttcatcttatattaatagaaaggaatatgttagacaaagaagaagtgagcattcaactttaagcttaaagggcattaaaaaat |
43658155 |
T |
|
| Q |
201 |
cattttgactgattcatggcgctctggagaaatatacgattctttaacaaataaatggactgaaatacaaacactgcctgtgaattttgggatagcttta |
300 |
Q |
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| T |
43658156 |
catttttactgattcatggcgctctggagaaatatacgattctttaacaaataaatggactgaaatacaaacactgcctgtgaattttgggatagcttta |
43658255 |
T |
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| Q |
301 |
tctggaactgtttgtggcagcatgttttatgttaactgagggcctgaaaggagtgaaaagcttgtagcgtatgacatagaaaaaggtttttggattgcaa |
400 |
Q |
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| T |
43658256 |
tctggaactgtttgtggcagcatgttttatgttaactgggggcctgaagggagtgaaaagcttgtagcgtatgacatagaaaaagatttttggattgcaa |
43658355 |
T |
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| Q |
401 |
tacaaacatatctac----cattcctacctgatttacgtggatatcgcactta |
449 |
Q |
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| T |
43658356 |
tacaaacatatctaccattcattcctacctgatttacgtggatatcgcactta |
43658408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 10367963 - 10368036
Alignment:
| Q |
348 |
aaggagtgaaaagcttgtagcgtatgacatagaaaaaggtttttggattgcaatacaaacatatctaccattcc |
421 |
Q |
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| T |
10367963 |
aaggaatgaaaagcttgcagcatatgacatagaaagaggtttttggattgtaattcaaacatctcaaccattcc |
10368036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 54155389 - 54155282
Alignment:
| Q |
226 |
ggagaaatatacgattctttaacaaataaatggactgaaatacaaacactgcctgtgaattttgggatagctttatctggaactgtttgtggcagcatgt |
325 |
Q |
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| T |
54155389 |
ggagaaatatatgattctatctccaataaatggactgaaatcccaagactgccttttgattttgggattgcttgttctggagttgtatgtggcaagatgt |
54155290 |
T |
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| Q |
326 |
tttatgtt |
333 |
Q |
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|||||||| |
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| T |
54155289 |
tttatgtt |
54155282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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