View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5565_low_34 (Length: 267)
Name: NF5565_low_34
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 16807609 - 16807725
Alignment:
| Q |
103 |
gtatactgttaaaagtgtttatactaacttaacctatgcttaagtcaattttaatgtgggttataagcatgttttgtgggttaaagcggttccactcaaa |
202 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16807609 |
gtatacggttaaaagtgtttatactaactaaactgatgcttaagtcaattttaatgtgggttataagcatgttttgtgggttaaagcgattccactcaaa |
16807708 |
T |
|
| Q |
203 |
gttaacatttttgtctg |
219 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16807709 |
gttaacatttttgtctg |
16807725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 16807482 - 16807556
Alignment:
| Q |
1 |
cgctgacatgtatcttttgggttggggtgttaatgaggaggcctagaagtggcgtatatgaggctgtttgcatgggaa |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
16807482 |
cgctgacatgtatcttttgggttggggtgttaatggggagg-ctagaagtggcg--tatgaggctgtttgcatgggaa |
16807556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 11966727 - 11966656
Alignment:
| Q |
144 |
aagtcaattttaatgtgggttataagcatgttttgtgggttaaagcggttccactcaaagttaacatttttgt |
216 |
Q |
| |
|
||||| |||| |||||||||||||| ||||| |||||| || |||||||||| |||||||||| ||||||||| |
|
|
| T |
11966727 |
aagtcgatttcaatgtgggttataatcatgtgttgtggctt-aagcggttccgctcaaagttatcatttttgt |
11966656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 3329304 - 3329242
Alignment:
| Q |
154 |
taatgtgggttataagcatgttttgtgggttaaagcggttccactcaaagttaacatttttgt |
216 |
Q |
| |
|
|||||||| ||||| ||||| | |||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
3329304 |
taatgtggagtataatcatgtgtggtggcttaaagcggtgccgctcaaagttaacatttttgt |
3329242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University