View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_35 (Length: 264)
Name: NF5565_low_35
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 35611567 - 35611821
Alignment:
| Q |
1 |
ctctcttccacagacatacaaagggaacaaacgtaaactatcaagcatccacgacttcgaaggttctcagccgtgggcatcttttgatgcataagaatga |
100 |
Q |
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| T |
35611567 |
ctctcttccgcggacatacaaagggaacaaacataaactatcaagcatccacgacttcgaaggttctcagccgtgggcatcttttgatgcataagaatga |
35611666 |
T |
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| Q |
101 |
gacagcagtatacaaaatttccaaatcaaatttgcccaatgaagcggtgcggccacgagatgcaagaaagcaaaggcttgcttcgcagacagagtgccat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35611667 |
gacagcggtatacaaaatttccaaatcaaatttgcccaatgaagcggtgcggccacgagatgcaagaaagcaaaggcttgcttcgcagacagagagccat |
35611766 |
T |
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| Q |
201 |
tcagggagtatatccaaaccaacctgtcagaaagcggtgagacaagcagtataat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
35611767 |
tcagggagtatatccaaaccaacctgtcagaaagcggcgagacaagcaatataat |
35611821 |
T |
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