View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_36 (Length: 262)
Name: NF5565_low_36
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_36 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 50608648 - 50608899
Alignment:
| Q |
11 |
cacagaaattggaaagaattttatatattgatatatcacactgaaaatagagtaataataaaacaaagcaacttgaaattcaaaatctttgataccgtac |
110 |
Q |
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| T |
50608648 |
cacagaaaatggaaagaattttatatattgatatatcacactgaaaatagagtaataataaaacaaagcaacttgaaattcaaaatctttgatgccgtac |
50608747 |
T |
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| Q |
111 |
ttcacattacaggacatcctgctctaattgctagacatcgaccatttcctgtgacacatgaagctgccgagaggtggttacttcatatgcaacaagcatt |
210 |
Q |
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| T |
50608748 |
ttcacattacaggacatcctgctctaattgctagacatcgaccatttcctgtgacacatgaagctgccgagaggtggttacttcatatgcaacaagcatt |
50608847 |
T |
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| Q |
211 |
ggacaacatttcagatatagatcatgattccaagataatgttgatgaacttt |
262 |
Q |
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| T |
50608848 |
ggacaacatttcagatatagatcatgattccaagataatgttgatgaacttt |
50608899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 20675 - 20801
Alignment:
| Q |
120 |
caggacatcctgctctaattgctagacatcgaccatttcctgtgacacatgaagctgccgagaggtggttacttcatatgcaacaagcattggacaacat |
219 |
Q |
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| T |
20675 |
caggtcatcctgctctaattggtcgacatcaaccatttccagtcacacatcaagctgcggagaggtggttacatcacatgcaactagcattggacactac |
20774 |
T |
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| Q |
220 |
ttcagatatagatcatgattccaagat |
246 |
Q |
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| T |
20775 |
tccagatatagatgatgactcaaagat |
20801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 1029850 - 1029976
Alignment:
| Q |
120 |
caggacatcctgctctaattgctagacatcgaccatttcctgtgacacatgaagctgccgagaggtggttacttcatatgcaacaagcattggacaacat |
219 |
Q |
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| T |
1029850 |
caggtcatcctgctctaattggtcgacatcaaccatttccagtcacacatcaagctgcggagaggtggttacatcacatgcaactagcattggacactac |
1029949 |
T |
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| Q |
220 |
ttcagatatagatcatgattccaagat |
246 |
Q |
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| T |
1029950 |
tccagatatagatgatgactcaaagat |
1029976 |
T |
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