View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_4 (Length: 575)
Name: NF5565_low_4
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Complemental strand, 28437348 - 28436805
Alignment:
| Q |
19 |
actttcatagcagaaatgcaggtgtattttggtctttcgtgcggtgaattacgaagtacccaaaaaggtattgtggtacactcaaaaaatctgcaacata |
118 |
Q |
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| T |
28437348 |
actttcatagcagaaatgcaggtgtattttggtctttcgtgcggtgaattacgaagtacccaaaaaggtattgtggtacactcaaaaaatctgcaacata |
28437249 |
T |
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| Q |
119 |
aatttagatttcagaacacaggataagaaaaactaatggagcaagagtttgccaaacatgatgtttttgttttcaatcactttcacctccaacatataag |
218 |
Q |
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| T |
28437248 |
aatttagatttcagaacacaggataagaaaaactaatggagcaagagtttgcctaacatgatgtttttgttttcaatcactttcacctccaacatataag |
28437149 |
T |
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| Q |
219 |
aacagtttttacaatttgttcagttttattacacatccaggttaaaatactttacagataaaagatggggtaaaactaaaactaaatcgtaattcctgct |
318 |
Q |
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| T |
28437148 |
aacagtttttacaatttgttcagttttattacacatccaggttaaaatactttacagataaaagatggggtaaaactaaaactaaatcgtaattcctgct |
28437049 |
T |
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| Q |
319 |
attagtgttcaatctatctccaatgaaaaaagcatcatattatgatgcaagagaacaagcaacaaaagaaatcaacatatctactgtaaaatcccaaaaa |
418 |
Q |
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| T |
28437048 |
attagtgttcaatctatctccaatgaaaaaagcatcatattatgatgcaagagaacaagcaacaaaagaaatcaacatatctactgtaaaatcccaaaaa |
28436949 |
T |
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| Q |
419 |
ctaaaatattcaggtcatttcattactatcttgacgtgtccaggaagaaaaaattaccgtggctttgcgccacccccactttcctccacattaaagacag |
518 |
Q |
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| T |
28436948 |
ctaaaatattaaggtcatttcattactatcttgacgtgtccaggaagaaaaaattaccgtggctttgcgccacccccactttcctccacattaaagacag |
28436849 |
T |
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| Q |
519 |
gagtagatgaaccgctggcactccttcttgatgcagattgccct |
562 |
Q |
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| T |
28436848 |
gagtagatgaaccgctggcactccttcttgatgcagattgccct |
28436805 |
T |
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