View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_40 (Length: 250)
Name: NF5565_low_40
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7767986 - 7768223
Alignment:
| Q |
1 |
tattgatacttttcctcgtcgcaaacaacttcctgttggatcatcaaatcagaaaactcttaatcagaaagtccgagtgcagcattggaattctaccaat |
100 |
Q |
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||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7767986 |
tattgatacttttcctcatcgcgaacaacttccttttgggtcatcaaatcagaaaactcttaatcagaaagtccgcgtgcagcattggaattctaccaat |
7768085 |
T |
|
| Q |
101 |
ttggcttctattgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7768086 |
ttggcttctattgcaaagcttagtggaagttcatatgttaagaatgttgctcctgatagaaacgaacgcagtttggaagtttatgatttcacagagaatg |
7768185 |
T |
|
| Q |
201 |
atgatttcaatcctttaactccttccaactctcctcct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7768186 |
atgatttcaatcctttaactccttccaactctcctcct |
7768223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 7774204 - 7774400
Alignment:
| Q |
42 |
catcaaatcagaaaactcttaatcagaaagtccgagtgcagcattggaattctaccaatttggcttctattgcaaagcttagtggaagttcatatgttaa |
141 |
Q |
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|||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||| || || | ||||||||||| | || ||||||| |||| ||| |
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| T |
7774204 |
catctaatcggaaaactcctaatcagaaaatccgagtgcagcattggaattctaccagcttagcctatattgcaaagcgttgtagaagttcgtatgctaa |
7774303 |
T |
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| Q |
142 |
gactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatgatgatttcaatcctttaactccttccaactctcctcct |
238 |
Q |
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| T |
7774304 |
gaatgttgcttctgatggaaacaaacgcagttcggaaatttatgatttcacagagaaggatgatttcaatcctttaactacttccaactctcctcct |
7774400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 7779029 - 7779201
Alignment:
| Q |
62 |
aatcagaaagtccgagtgcagcattggaattctaccaatttggcttctattgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnn |
161 |
Q |
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||||||||| ||||||||| ||||||| | ||||||| ||||||| |||| |||||||| ||||||||||||||| ||||| ||||||| ||||||| |
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| T |
7779029 |
aatcagaaaatccgagtgcggcattgggagtctaccagcttggcttatatttcaaagcttggtggaagttcatatgctaagaatgttgcttctgatagca |
7779128 |
T |
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| Q |
162 |
nnnnncgcagtttggaagtttatgatttcacagagaatgatgatttcaatcctttaactccttccaactctcc |
234 |
Q |
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| T |
7779129 |
acaaacgcagtttagaagtttatgatttcacagagaacgacgatttcaatcctgtaactccttccaagtctcc |
7779201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 7778986 - 7779038
Alignment:
| Q |
4 |
tgatacttttcctcgtcgcaaacaacttcctgttggatcatcaaatcagaaaa |
56 |
Q |
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|||||||||||||||||| ||||| ||||| | || |||||||||||||||| |
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| T |
7778986 |
tgatacttttcctcgtcgtgaacaatttcctttcgggtcatcaaatcagaaaa |
7779038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 12752613 - 12752489
Alignment:
| Q |
110 |
attgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatgatgatttca |
209 |
Q |
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|||||||||| | |||| |||||||||| | ||| |||||||||||||| ||||| |||||| | ||||||| | ||||||||||| ||||| |
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| T |
12752613 |
attgcaaagcctggtgggagttcatatgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttca |
12752514 |
T |
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| Q |
210 |
atcctttaactccttccaactctcc |
234 |
Q |
| |
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|| | ||||||||| |||||||||| |
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| T |
12752513 |
atgccttaactcctcccaactctcc |
12752489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 12815573 - 12815449
Alignment:
| Q |
110 |
attgcaaagcttagtggaagttcatatgttaagactgttgctcctgatagnnnnnnncgcagtttggaagtttatgatttcacagagaatgatgatttca |
209 |
Q |
| |
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|||||||||| | |||| |||||||||| | ||| |||||||||||||| ||||| |||||| | ||||||| | ||||||||||| ||||| |
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| T |
12815573 |
attgcaaagcctggtgggagttcatatgctgagaatgttgctcctgataaaagcaaatgcagtctggaagctaatgattttatagagaatgatgttttca |
12815474 |
T |
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| Q |
210 |
atcctttaactccttccaactctcc |
234 |
Q |
| |
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|| | ||||||||| |||||||||| |
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| T |
12815473 |
atgccttaactcctcccaactctcc |
12815449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12752740 - 12752680
Alignment:
| Q |
1 |
tattgatacttttcctcgtcgcaaacaacttcctgttggatcatcaaatcagaaaactctt |
61 |
Q |
| |
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||||||| ||| |||| | ||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
12752740 |
tattgatgcttctccttgccgcaaacaatttcctgctgggccatcaaatcagaaaactctt |
12752680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12815700 - 12815640
Alignment:
| Q |
1 |
tattgatacttttcctcgtcgcaaacaacttcctgttggatcatcaaatcagaaaactctt |
61 |
Q |
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||||||| ||| |||| | ||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
12815700 |
tattgatgcttctccttgccgcaaacaatttcctgctgggccatcaaatcagaaaactctt |
12815640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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