View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_low_43 (Length: 242)

Name: NF5565_low_43
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_low_43
NF5565_low_43
[»] chr1 (2 HSPs)
chr1 (34-242)||(28666876-28667084)
chr1 (59-96)||(7440960-7440997)
[»] chr2 (2 HSPs)
chr2 (21-102)||(38288428-38288509)
chr2 (27-96)||(31395151-31395219)
[»] chr6 (4 HSPs)
chr6 (21-94)||(33908574-33908647)
chr6 (27-96)||(9627135-9627204)
chr6 (27-96)||(12155387-12155454)
chr6 (21-93)||(1415600-1415672)
[»] chr8 (2 HSPs)
chr8 (27-96)||(14958111-14958180)
chr8 (27-88)||(9293232-9293293)
[»] chr5 (3 HSPs)
chr5 (29-89)||(7237068-7237128)
chr5 (48-96)||(41715159-41715207)
chr5 (52-96)||(38755742-38755786)
[»] chr3 (4 HSPs)
chr3 (21-106)||(8543120-8543210)
chr3 (21-87)||(8541448-8541515)
chr3 (27-96)||(11630116-11630186)
chr3 (19-56)||(43361696-43361733)
[»] chr4 (2 HSPs)
chr4 (25-89)||(865245-865309)
chr4 (28-103)||(3284089-3284166)
[»] chr7 (1 HSPs)
chr7 (44-95)||(15077104-15077155)
[»] scaffold0027 (1 HSPs)
scaffold0027 (28-94)||(43611-43677)
[»] scaffold0035 (1 HSPs)
scaffold0035 (45-94)||(24525-24574)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 28666876 - 28667084
Alignment:
Q  34 aatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgttctaacaacattaatgttagctatgtctatnnnnnnnn 133  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  28666876 aatatcgtgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgttctaacaacattaatgttagctatgtctataaatttgt 28666975  T
Q  134 ntttcctaattcaaactccctcattctctctgcatttaaccattgtcaagcaatttgaagtctgcaatatccaacacactagactctaatctctcttgac 233  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28666976 ttttcctaattcaaactccctcattctctctgcatttaaccattgtcaagcaatttgaagtctgcaatatccaacacactagactctaatctctcttgac 28667075  T
Q  234 aaaatttgc 242  Q
    |||||||||    
T  28667076 aaaatttgc 28667084  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 7440960 - 7440997
Alignment:
Q  59 ctttcgttctcttatttaatcttttgttactagttgtt 96  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  7440960 ctttcgttctcttatttaatcttatgttactagatgtt 7440997  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 38288509 - 38288428
Alignment:
Q  21 aactacgttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgttctaaca 102  Q
    |||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  38288509 aactacgttaacaaatatcatgtgttaattgtctttctctttcaatctcttatttaatcttttgttactagttgttctaaca 38288428  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 31395219 - 31395151
Alignment:
Q  27 gttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgtt 96  Q
    |||||||||||||||| |||||||||||||  |||||||| |||||||| || |||||||||||||||||    
T  31395219 gttaacaaatatcatgtgttcattgtcttttactttcgttttcttattt-atattttgttactagttgtt 31395151  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 33908647 - 33908574
Alignment:
Q  21 aactacgttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttg 94  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33908647 aactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttg 33908574  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 9627204 - 9627135
Alignment:
Q  27 gttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgtt 96  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  9627204 gttaacaaatatcatgtgttcattgtgtttctctttcattctcttatttaatcttttgtttctagttgtt 9627135  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 12155454 - 12155387
Alignment:
Q  27 gttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgtt 96  Q
    ||||| ||||||  || |||||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  12155454 gttaaaaaatattgtgtgttcattgtctttctctttcgttctctta--taattttttgttactagttgtt 12155387  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 1415600 - 1415672
Alignment:
Q  21 aactacgttaacaaatatcatgcgttcattgtcttt-ctctttcgttctcttatttaatcttttgttactagtt 93  Q
    |||| ||||||||| |||| ||  || ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  1415600 aactgcgttaacaagtatcgtgtatttattgtcttttctctttcgttctctta-ttaatcttttgttattagtt 1415672  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 14958111 - 14958180
Alignment:
Q  27 gttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgtt 96  Q
    ||||||||||||| |  |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  14958111 gttaacaaatatcctatgttcattgtcttcctctttcgttctcttgtttaatcttttgttactagttgtt 14958180  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 9293293 - 9293232
Alignment:
Q  27 gttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttac 88  Q
    ||||||||||||  || ||||||||||||||||||| |||||||||||||||||||||||||    
T  9293293 gttaacaaatattgtgtgttcattgtctttctcttttgttctcttatttaatcttttgttac 9293232  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 7237128 - 7237068
Alignment:
Q  29 taacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttact 89  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7237128 taacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttact 7237068  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 41715159 - 41715207
Alignment:
Q  48 attgtctttctctttcgttctcttatttaatcttttgttactagttgtt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41715159 attgtctttctctttcgttctcttatttaatcttttgttactagttgtt 41715207  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 38755742 - 38755786
Alignment:
Q  52 tctttctctttcgttctcttatttaatcttttgttactagttgtt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38755742 tctttctctttcgttctcttatttaatcttttgttactagttgtt 38755786  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 8543120 - 8543210
Alignment:
Q  21 aactacgttaacaaatatcatgcgttcattgtctttctct-ttcgttctcttatttaatcttttgttacta----gttgttctaacaacat 106  Q
    |||| |||||||||||||| |  ||||||||||||||| | ||||||||||||||||||||||||||| ||    ||||||||||||||||    
T  8543120 aactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctcttatttaatcttttgttaatatgttgttgttctaacaacat 8543210  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 8541448 - 8541515
Alignment:
Q  21 aactacgttaacaaatatcatgcgttcattgtctttctct-ttcgttctcttatttaatcttttgtta 87  Q
    |||| |||||||||||||| || || | |||||||||||| |||||||||||||||||||||||||||    
T  8541448 aactgcgttaacaaatatcgtgtgtgcgttgtctttctctcttcgttctcttatttaatcttttgtta 8541515  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 11630116 - 11630186
Alignment:
Q  27 gttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatc-ttttgttactagttgtt 96  Q
    ||||||||||||| |  | ||||||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  11630116 gttaacaaatatcgtatgatcattgtctttttcttttgttctcttatttaatctttttgttactagttgtt 11630186  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 43361696 - 43361733
Alignment:
Q  19 caaactacgttaacaaatatcatgcgttcattgtcttt 56  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43361696 caaactacgttaacaaatatcatgtgttcattgtcttt 43361733  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 865309 - 865245
Alignment:
Q  25 acgttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttact 89  Q
    ||||||||||||||| ||  |||||| |||||  |||||||||||||||||||| ||||||||||    
T  865309 acgttaacaaatatcgtgttttcattttcttttactttcgttctcttatttaattttttgttact 865245  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 3284166 - 3284089
Alignment:
Q  28 ttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttacta--gttgttctaacaa 103  Q
    |||||||||||| |  |||||||||||||  |||||| ||| |||||||||||| ||||| ||  |||||||||||||    
T  3284166 ttaacaaatatcgtatgttcattgtcttttactttcggtcttttatttaatcttatgttagtattgttgttctaacaa 3284089  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 15077155 - 15077104
Alignment:
Q  44 gttcattgtctttctctttcgttctcttatttaatcttttgttactagttgt 95  Q
    ||||||||| |||  |||||||||||||||||||||| ||||||||||||||    
T  15077155 gttcattgttttttactttcgttctcttatttaatctgttgttactagttgt 15077104  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 43677 - 43611
Alignment:
Q  28 ttaacaaatatcatgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttg 94  Q
    ||||||||||| ||| ||| ||| ||||||||||| |||||||||||||||| |||  |||||||||    
T  43677 ttaacaaatattatgtgtttattatctttctcttttgttctcttatttaatcattttatactagttg 43611  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 24525 - 24574
Alignment:
Q  45 ttcattgtctttctctttcgttctcttatttaatcttttgttactagttg 94  Q
    ||||||||||||  |||| |||||||||||||||||| |||||| |||||    
T  24525 ttcattgtcttttacttttgttctcttatttaatcttctgttaccagttg 24574  T

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