View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_44 (Length: 239)
Name: NF5565_low_44
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 50608920 - 50609142
Alignment:
| Q |
1 |
caattcaattatatgatcacattgtagaaatcaaatcaataaaaataaatagcaaccttgtgttttcaggcacactgcatattttcttgttgctggagtt |
100 |
Q |
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| T |
50608920 |
caattcaattatatgatcacattgtagaaatcaaatcaataaaaataaatagcaaccttatgttttcaggcacactgcatattttcttgttgctggagtt |
50609019 |
T |
|
| Q |
101 |
gaacaaaagaatcaaagccttcacccttgcaaggatgcagatggaaggcatccatgtaaaaacttttagcatttttatttctgcaaaatgttgaaggatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50609020 |
gaacaaaagaatcaaagccttcacccttgcaaggatgcagatggaaggcatccatgtaaaaacttttagcatttttatttctgcaaaaggttgaaggatc |
50609119 |
T |
|
| Q |
201 |
tatcaactagtattatacaattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
50609120 |
tatcaactagtattatacaattt |
50609142 |
T |
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