View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5565_low_5 (Length: 527)
Name: NF5565_low_5
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_5 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 30792133 - 30792627
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30792133 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgaggacatgaaagtgtatacaagactcatttatcat |
30792232 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30792233 |
gtggcaaagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
30792332 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30792333 |
aaagcacataaatattgttaagctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
30792432 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacata |
417 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30792433 |
tttgtatgatgatgtagaagttgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacata |
30792532 |
T |
|
| Q |
418 |
agaagaatatgacnnnnnnnnnnnnnnnnnngaagatggaaacaagaaggttttttgtttcaacttttgtaacttcgtggtttttaattatgtccctttg |
517 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30792533 |
agaagaatatgac-----aaagagagaggaagaagatggaaacaagaaggttttttgtttcaacttttgtaacttcgtggtttttaattatgtccctttg |
30792627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 9532387 - 9532018
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||| |||| ||||| ||| |||||||||||||||||| ||| ||| |
|
|
| T |
9532387 |
atagcatattttgacattattaaagcaatacaacactttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccat |
9532288 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
||| || |||||| |||||| |||||||||||| ||||||| || | ||| ||||||||| | | ||||||| |||||||| ||||||||||| | |||| |
|
|
| T |
9532287 |
gtgacaaagttgtcgccttaaagaaacttcacatctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaat |
9532188 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| | ||| || ||||||||| |||||||||||||||||||||| |||||| |||| | ||||| | |
|
|
| T |
9532187 |
aaatcacataaatattgttaagctttatggattatgattgtac-aaaagaatcatgtttttgatctatcaatacgt-gagaaaggaagtttgttctcgtt |
9532090 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgtta |
389 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||||| || | ||||||| |
|
|
| T |
9532089 |
tttgtatgatgatgtagaagttgtggaattcaattggagaaaaagacttaatgaatgataaaaatattgtta |
9532018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 29 - 362
Target Start/End: Original strand, 1088489 - 1088821
Alignment:
| Q |
29 |
tgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagtt |
128 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||| ||| | ||| ||||| || |||||| |||||| | || ||| || |||||| ||| |
|
|
| T |
1088489 |
tgacattattaaagcaacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggtt |
1088588 |
T |
|
| Q |
129 |
gttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataa |
228 |
Q |
| |
|
||||||||| ||||||||||| ||||||| | | || ||||||||| | ||||||| |||||||||||||||||||||| |||||||||||| | |
|
|
| T |
1088589 |
gttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaac |
1088688 |
T |
|
| Q |
229 |
atattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatg |
328 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| |||||||||| |
|
|
| T |
1088689 |
atattgtgaagctttatggattctgcttgcacaaaa-gaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatg |
1088787 |
T |
|
| Q |
329 |
atgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
1088788 |
atgtagaagctgtggaattcaattggagaaaaag |
1088821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 1557746 - 1557403
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||||||| || |||||||||| ||||||| ||| | ||| ||||| ||| |||||| |||||| | || ||| ||| |
|
|
| T |
1557746 |
atagcatatgatgacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccat |
1557647 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||| | |||||||| ||| ||||||||||| ||||||| | | || ||||||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1557646 |
gtggtaatgttgttgctttaaagaaacttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaat |
1557547 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
|||||||| | |||| || ||||||||| |||||| ||||||||||| ||||| |||||||||| ||||||||| | |||||| |||||| ||||| ||| |
|
|
| T |
1557546 |
aaagcacaaacatatcgtgaagctttatggattctgcttgcacaaaa-gaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgt |
1557448 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
1557447 |
cttgtatgatgatgtggaagctgtggaattcaattggagaaaaag |
1557403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 1604214 - 1604557
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| ||| |||||| || |||| ||||| ||||||| ||| | ||| ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
1604214 |
atagcatatgatgacatcgttagagcaacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaa |
1604313 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| | | || ||||||||| | ||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
1604314 |
gtggcaaggttgttgccttaaagaaacttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaat |
1604413 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| |
|
|
| T |
1604414 |
aaagcaccgacatattgtgaagctttatggattctgcttgcacaaaa-gaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgt |
1604512 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
1604513 |
cttgtatgatgatgtagaagccgtggaattcaagtggagaaaaag |
1604557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 1105827 - 1106166
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || |||||||| || |||||||||| ||||||| ||| | || ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
1105827 |
atagcatatgatgacataatcaaagcaacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaa |
1105926 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| | || ||||||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1105927 |
gtggcaaggttgttgccttaaagaaacttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaat |
1106026 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||| ||||||| ||||||||| |||||||||||||||| ||| | |||||| ||||| ||||| | | |
|
|
| T |
1106027 |
aaagcaccgacatattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctat |
1106125 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaa |
358 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1106126 |
cttgtatgatgatgtagaagccgtggaattcaattggagaa |
1106166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 1541802 - 1541459
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||||||| || |||| ||||| ||||||| ||| | || ||||| ||| |||||| |||||| | || ||| ||| |
|
|
| T |
1541802 |
atagcatatgatgacatcatcaaagcaacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccat |
1541703 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||| | |||||||||||| ||||||||||| ||||||| | | || ||||||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1541702 |
gtggaaaggttgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaat |
1541603 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||| | ||||||||||| ||||| |||||||||||||||||||| | |||| | |||||| |||| ||| |
|
|
| T |
1541602 |
aaagcaccgacatattgtgaagctttatggattttgcttgcacaaaa-gaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgt |
1541504 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||| ||||| |
|
|
| T |
1541503 |
cttgtatgatgatgtagaagccgtggaattcaagtggaggaaaag |
1541459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 1551036 - 1550693
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
||||||| || ||||||||||||||||||| || |||||||||| ||||||| ||| | || ||||| ||| |||||| |||||| | || ||| ||| |
|
|
| T |
1551036 |
atagcatttgatgacattattaaagcaacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccat |
1550937 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| ||||| |||||| |||||||||| ||||||| || | || ||||||||| | ||||||| |||||||||||||||||| || |||| |
|
|
| T |
1550936 |
gtggcaaggttgtcgccttaaagaaacttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaat |
1550837 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| |||||| || |||||| ||||||||| | ||||| |||||||||||||||| ||| | |||| | |||||| |||| ||| |
|
|
| T |
1550836 |
aaagcaccgacatattgtgaagcttcatggattctgcttgcacaaga-gaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgt |
1550738 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1550737 |
cttgtatgacgatgtagaagctgtggaattcaattggagaaaaag |
1550693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 1595884 - 1596223
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||||||| || |||||||||| ||||||| ||| | || ||||| ||| |||||| |||| | | || ||| || |
|
|
| T |
1595884 |
atagcatatgatgacataatcaaagcaacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaa |
1595983 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||| | |||||||||||| ||||||||||| ||||||| | | || ||||||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1595984 |
gtggaaaggttgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaat |
1596083 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||| ||||||| ||||||||| |||||||||||||||| ||| | |||||| ||||| ||||| ||| |
|
|
| T |
1596084 |
aaagcaccgacatattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgt |
1596182 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaa |
358 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
1596183 |
cttgtatgatgatgtagaagccgtggaattcaagtggagaa |
1596223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 2321020 - 2321363
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| |||| |||||| || | |||||||||||||||| ||| | ||| ||||| ||| |||||| |||||| | || ||| ||| |
|
|
| T |
2321020 |
atagcatatgatgacatcattagagcaacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccat |
2321119 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||| | |||||||||||| ||||||||||| ||||||| || | || || |||||| | |||||| | |||||||||||||||||||||| |||| |
|
|
| T |
2321120 |
gtggaaaagttgttgccttgaagaaacttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaat |
2321219 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||| | ||||||| ||||||||| ||||||||||||| || ||| | |||| | |||| | ||||| || |
|
|
| T |
2321220 |
aaagcaccgaaatattgtgaagctttatggattttgcttgcac-aaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgt |
2321318 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
||||||||||||| ||| || || ||||||||||||||||||| |
|
|
| T |
2321319 |
cttgtatgatgatgcagaggccatggaattcaattggagaaaaag |
2321363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 29 - 362
Target Start/End: Original strand, 2337428 - 2337760
Alignment:
| Q |
29 |
tgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagtt |
128 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| ||| | |||| ||||| ||| |||||| || ||| | || ||| ||||||| | |||| |
|
|
| T |
2337428 |
tgacattattaaagcaacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagtt |
2337527 |
T |
|
| Q |
129 |
gttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataa |
228 |
Q |
| |
|
||||| || ||||||||||| ||||||| || | || ||||||||| | ||||||| ||||||||||| |||||||||| | ||||||||| | |
|
|
| T |
2337528 |
gttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgac |
2337627 |
T |
|
| Q |
229 |
atattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatg |
328 |
Q |
| |
|
|||| || ||||||||| |||||| | ||| | ||||||| ||||||||||||| | ||| | |||||| | |||| ||||| || |||||||||| |
|
|
| T |
2337628 |
atatcgtgaagctttatggattctgtctccac-agaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgtatgatg |
2337726 |
T |
|
| Q |
329 |
atgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
| || ||||| ||| ||||||||||||||||||| |
|
|
| T |
2337727 |
aagttgaagccgtggaattcaattggagaaaaag |
2337760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 29 - 362
Target Start/End: Original strand, 2329529 - 2329861
Alignment:
| Q |
29 |
tgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagtt |
128 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||| || | ||| ||||| ||| |||||| |||||| | || ||| ||||||| | |||| |
|
|
| T |
2329529 |
tgacatcattaaagcaacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagtt |
2329628 |
T |
|
| Q |
129 |
gttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataa |
228 |
Q |
| |
|
||||| || ||||||||||| ||||||| || | || ||||||||| | ||||||| |||||||||||||||||||||| | ||||||||| |
|
|
| T |
2329629 |
gttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggc |
2329728 |
T |
|
| Q |
229 |
atattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatg |
328 |
Q |
| |
|
|||| || ||||||||| |||||| | ||| | ||||||| ||||||||||||| | ||| | |||||| | |||| ||||| ||| |||||||||| |
|
|
| T |
2329729 |
atatcgtgaagctttatggattctgtctccac-agaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgtatgatg |
2329827 |
T |
|
| Q |
329 |
atgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
2329828 |
aaggtgaagccgtggaattcaattggagaaaaag |
2329861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 429
Target Start/End: Complemental strand, 30791779 - 30791683
Alignment:
| Q |
333 |
agaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaatatga |
429 |
Q |
| |
|
||||| |||| |||||||||||||||||||| || ||| |||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
30791779 |
agaagttgtggaattcaattggagaaaaagacttgatgaatgaccaagacattgttagcaggacatgtgatttcagaggcacagaagaagaatatga |
30791683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 29 - 362
Target Start/End: Complemental strand, 3955783 - 3955451
Alignment:
| Q |
29 |
tgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagtt |
128 |
Q |
| |
|
|||||| |||| ||||||| || |||||||||||| ||||| ||| | | | ||||| ||| |||||| |||||| | || ||| || |||| | | || |
|
|
| T |
3955783 |
tgacatcattagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaattt |
3955684 |
T |
|
| Q |
129 |
gttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataa |
228 |
Q |
| |
|
||||| || | |||||||| | ||| ||| || | ||| ||||| ||| | |||||| | ||||||||||| |||||||||| |||||||||||| || |
|
|
| T |
3955683 |
gttgcactaaaaaaacttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaa |
3955584 |
T |
|
| Q |
229 |
atattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatg |
328 |
Q |
| |
|
||||||| ||||||||| |||| | ||||| |||||| | |||||||||||||||| || | || ||| |||||| ||||| || ||| |||||| |
|
|
| T |
3955583 |
atattgtgaagctttatggattttgtttgca-taaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatg |
3955485 |
T |
|
| Q |
329 |
atgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
|||| ||||| | |||||| ||||||| ||||| |
|
|
| T |
3955484 |
atgtcgaagccataaaattcgattggaggaaaag |
3955451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 19250235 - 19250615
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| || || ||||||||||||||||||||| ||| ||| |
|
|
| T |
19250235 |
atagcatatgttgacattattaaagcaacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccat |
19250334 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||| | |||||| || ||| ||||| |||||||||||||| | ||||| | ||||||| | | ||||||| || ||||||||||||||||||||| || |
|
|
| T |
19250335 |
gtggtaaagttgtcgctttaaagaaatttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatat |
19250434 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||| | || ||| |||||| ||||| || |
|
|
| T |
19250435 |
aaaacacataaatattgttaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggt |
19250532 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgt |
400 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19250533 |
tttgtatgatgatgtagaagttgtggaattcaattggagaaaaagacttaatggatgatgaagacaatgttagcatgacatgt |
19250615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 29 - 392
Target Start/End: Complemental strand, 41669111 - 41668754
Alignment:
| Q |
29 |
tgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagtt |
128 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||| |||||||||||||||||| ||||||||||||| | || |
|
|
| T |
41669111 |
tgacattattaaagc-----aacactttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaattt |
41669017 |
T |
|
| Q |
129 |
gttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataa |
228 |
Q |
| |
|
| ||||| |||||||||||||||||||| || ||||||||||||||| | ||||||| || |||||||| |||||||| | |||||||||| |||| |
|
|
| T |
41669016 |
gccaccttaaagaaacttcacaactatgaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataa |
41668917 |
T |
|
| Q |
229 |
atattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgttttgtatgat |
327 |
Q |
| |
|
||||||||||||||||| |||| | ||||||| |||||||| ||||||| ||||||| |||| | || ||||| ||| | ||||| ||||||||||| |
|
|
| T |
41668916 |
atattgttaagctttatggattttgcttgcac-aaaagaataatgtttttaatctatcgatacat-gaaaaaagaaagtttgttctcagttttgtatgag |
41668819 |
T |
|
| Q |
328 |
gatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagca |
392 |
Q |
| |
|
||| ||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
41668818 |
gatttagaagctgtggaattcaattgcagaaaaagacttaattgatgatgaagacattgttagca |
41668754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 41669476 - 41669571
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaa |
424 |
Q |
| |
|
|||| ||||| | ||||||||||||| ||||||| | ||||||||||||||||||||||| || | |||||| ||||||| ||||| |||||||| |
|
|
| T |
41669476 |
gatgaagaagttctgaaattcaattgaagaaaaaaacataatggatgatgaagacattgtt-gccaggcatgtgatttcagaagcacaaaagaagaa |
41669571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 49 - 399
Target Start/End: Complemental strand, 42978022 - 42977673
Alignment:
| Q |
49 |
aacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagttgttgccttatagaaacttca |
148 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||| ||| |||||||||||||||||| ||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
42978022 |
aacactttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttca |
42977923 |
T |
|
| Q |
149 |
caactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaatattgttaagctttataga |
248 |
Q |
| |
|
|||||||||| || ||||||||||||||| | | | ||||| || ||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |
|
|
| T |
42977922 |
caactatgaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatgga |
42977823 |
T |
|
| Q |
249 |
ttctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgttttgtatgatgatgtagaagctgtgaaatt |
347 |
Q |
| |
|
|| | ||||||| ||||||||| ||||||| |||||||||||| | || ||||| ||| | ||||| ||||||||||| ||| ||||||||||| |||| |
|
|
| T |
42977822 |
ttttgcttgcac-aaaagaatcatgtttttaatctatcaatacat-gaaaaaagaaagtttgttctcggttttgtatgaggatttagaagctgtggaatt |
42977725 |
T |
|
| Q |
348 |
caattggagaaaaagatttaatggatgatgaagacattgttagcatgacatg |
399 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
42977724 |
taattgcagaaaaagacttaattgatgatgaagacattgttagcaggacatg |
42977673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 22 - 392
Target Start/End: Original strand, 54122759 - 54123123
Alignment:
| Q |
22 |
catatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtgg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
54122759 |
catatgatgacattattaaagcaaca-----ctttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtgg |
54122853 |
T |
|
| Q |
122 |
cagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaag |
221 |
Q |
| |
|
|| | ||| ||||| |||||||||||||||||||| || ||||||||||||||| | ||||||| || ||||||||||||||||| | |||||||| |
|
|
| T |
54122854 |
caaatttgccaccttaaagaaacttcacaactatgaagcagatgtgtcatcttttgatgtgagtttcacaattgaagtgagaatattataaaaaataaag |
54122953 |
T |
|
| Q |
222 |
cacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgtttt |
320 |
Q |
| |
|
|| |||||||| |||||||||||| ||| | ||||||| ||||||||| ||||||| |||||||||||| | || ||||| ||| | ||||| ||||| |
|
|
| T |
54122954 |
cagataaatatctttaagctttatatattttgcttgcac-aaaagaatcatgtttttaatctatcaatacat-gaaaaaagaaagtttgttctcagtttt |
54123051 |
T |
|
| Q |
321 |
gtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagca |
392 |
Q |
| |
|
||||| ||| |||||| |||| |||||||||| || |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
54123052 |
gtatgcggatttagaagatgtggaattcaattgcaggaaaagacttaattgatgatgaagacattgttagca |
54123123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 49 - 392
Target Start/End: Complemental strand, 48712680 - 48712339
Alignment:
| Q |
49 |
aacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagttgttgccttatagaaacttca |
148 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||| ||| |||||||||||||||||| ||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
48712680 |
aacactttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttca |
48712581 |
T |
|
| Q |
149 |
caactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaatattgttaagctttataga |
248 |
Q |
| |
|
||||||| || || ||||||| ||||||| | | | ||||| || ||||||||||||||||||| ||||||| || ||||||||||||||||||||| || |
|
|
| T |
48712580 |
caactattaagcagatgtgtcttcttttgatgcgattttcagaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatgga |
48712482 |
T |
|
| Q |
249 |
ttctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgttttgtatgatgatgtagaagctgtgaaatt |
347 |
Q |
| |
|
|| | ||||||| ||||||||| | |||| |||||||||||| | || ||||| ||| | ||||| |||||||||| ||| |||||| |||| |||| |
|
|
| T |
48712481 |
ttttgcttgcac-aaaagaatcatattttcaatctatcaatacat-gaaaaaagaaagtttgttctcgattttgtatgaggatttagaagttgtggaatt |
48712384 |
T |
|
| Q |
348 |
caattggagaaaaagatttaatggatgatgaagacattgttagca |
392 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
48712383 |
caattgcagaaaaagacttaattgatgatgaagacattgttagca |
48712339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 16880124 - 16880347
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||| ||| ||||| ||| ||||||||||||||||| ||| ||| |
|
|
| T |
16880124 |
atagcatatgtggacattattaaagaaacacaacactttgacattagatattgcatcggcacaagagcatatggaagtgtatacaagactcgattaccat |
16880223 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaa-gtgagaatattatcataaa |
216 |
Q |
| |
|
| ||| ||||| |||||| ||||| |||||||||||||| ||| ||||||||||||| | | ||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
16880224 |
cttgcaaagttgccgccttaaagaaatttcacaactatgaagtaaaagtgtcatcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaa |
16880323 |
T |
|
| Q |
217 |
taaagcacataaatattgttaagc |
240 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
16880324 |
taaagcacataaatatcgttaagc |
16880347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 48713069 - 48713164
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaa |
424 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| || | |||||| ||||||| ||||| |||||||| |
|
|
| T |
48713069 |
gatgaagaagctgtgaaattcaattgaagaaaaaaaaataatggatgatgaagacattgtt-gccaggcatgtgatttcagaagcacaaaagaagaa |
48713164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 10337666 - 10337570
Alignment:
| Q |
326 |
atgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaa |
424 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| || ||||||| ||||||||||||||| || |||||||| ||||||| | ||| |||||||| |
|
|
| T |
10337666 |
atgatgaagaagctgtgaaattcaattgaagaaaaa-atataatggaggatgaagacattgttgtca-gacatgtgatttcagaagtacaaaagaagaa |
10337570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 54122383 - 54122323
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgtt |
388 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
54122383 |
gatgaagaagctgtgaaattcaattgaagaaaaaaacataatggatgatgaagacattgtt |
54122323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 16879746 - 16879671
Alignment:
| Q |
326 |
atgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtg |
401 |
Q |
| |
|
|||||| ||||| |||| ||||||||||| |||||||| ||||||||||||||||| ||| |||| ||| |||||| |
|
|
| T |
16879746 |
atgatgaagaagttgtggaattcaattggtgaaaaagacttaatggatgatgaagagattcttagtatggcatgtg |
16879671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 42978427 - 42978481
Alignment:
| Q |
335 |
aagctgtgaaattcaattggagaaaaagatt-taatggatgatgaagacattgtt |
388 |
Q |
| |
|
|||| |||||||||||||| ||||||| | | ||||||||||||||||||||||| |
|
|
| T |
42978427 |
aagccgtgaaattcaattgaagaaaaaaaatataatggatgatgaagacattgtt |
42978481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 49 - 392
Target Start/End: Original strand, 31657880 - 31658222
Alignment:
| Q |
49 |
aacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtggcagagttgttgccttatagaaacttca |
148 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||| | |||| ||||| |||||||||| |
|
|
| T |
31657880 |
aacactttgacattagatattgcatcgtgacataagcacatggaagtgtatacaagactcaattatcatgtggcaaatttgtcaccttaaagaaacttca |
31657979 |
T |
|
| Q |
149 |
caactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaatattgttaagctttataga |
248 |
Q |
| |
|
|||||| |||| | ||||||||||||||| | | | ||||| || ||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |
|
|
| T |
31657980 |
caactacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatgga |
31658079 |
T |
|
| Q |
249 |
ttctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgttttgtatgatgatgtagaagctgtgaaatt |
347 |
Q |
| |
|
|| | ||||||| ||||||||| ||||||| |||||||||||| | || ||||| ||| | ||||| ||||| ||||| ||| |||||||||| |||| |
|
|
| T |
31658080 |
ttttgcttgcac-aaaagaatcatgtttttaatctatcaatacat-gaaaaaagaaagtttgttctcggttttatatgaggatttagaagctgtagaatt |
31658177 |
T |
|
| Q |
348 |
caattggagaaaaagatttaatggatgatgaagacattgttagca |
392 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
31658178 |
taattgcagaaaaagacttaattgatgatgaagacattgttagca |
31658222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 29748675 - 29748721
Alignment:
| Q |
25 |
atgttgacattattaaagcaacataacactttgacattagatattac |
71 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29748675 |
atgttgacgttattaaagcaacacaacactttgacattagatattac |
29748721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 31657481 - 31657428
Alignment:
| Q |
335 |
aagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgtt |
388 |
Q |
| |
|
|||| |||||||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
31657481 |
aagccgtgaaattcaattgaagaaaaaaatataatggatgatgaagacattgtt |
31657428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 22 - 392
Target Start/End: Complemental strand, 8873365 - 8873000
Alignment:
| Q |
22 |
catatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtgg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
8873365 |
catatgatgacattattaaagcaaca-----ctttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtgg |
8873271 |
T |
|
| Q |
122 |
cagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaag |
221 |
Q |
| |
|
|| | ||| ||||| |||||||||||||||||||| || |||||||||| |||| | | ||||||| || ||||||||||||||||| | |||||||| |
|
|
| T |
8873270 |
caaatttgcgaccttaaagaaacttcacaactatgaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaag |
8873171 |
T |
|
| Q |
222 |
cacataaatattgttaagctttataga-ttctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgttt |
319 |
Q |
| |
|
|| ||||||||| ||||||||||| || || | ||||||| ||||||||| ||||||| |||||||||||| | || ||||| ||| | ||||| ||| |
|
|
| T |
8873170 |
cagataaatattattaagctttatggatttttgcttgcac-aaaagaatcatgtttttaatctatcaatacat-gaaaaaagaaagtttgttctcgattt |
8873073 |
T |
|
| Q |
320 |
tgtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagca |
392 |
Q |
| |
|
||||||| ||| |||||| |||| |||||||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
8873072 |
tgtatgaggatttagaagatgtggaattcaattgcagaaaaagacttaattgatgatgaagacattgttagca |
8873000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 22 - 392
Target Start/End: Original strand, 36620450 - 36620810
Alignment:
| Q |
22 |
catatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtgg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||| |||| ||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
36620450 |
catatgatgacattattaaagcaaca-----ctttgacattagatatg-catcgtgacataagcatatggaagtttatacaagactcaattatcatgtgg |
36620543 |
T |
|
| Q |
122 |
cagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaag |
221 |
Q |
| |
|
|| | ||| ||||| ||||||||||||||||| || || |||| |||||||| | | ||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
36620544 |
caaatttgccaccttaaagaaacttcacaactattaagcagatgt---atcttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaag |
36620640 |
T |
|
| Q |
222 |
cacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgtttt |
320 |
Q |
| |
|
|| ||||||||||||||||||||| |||| | ||||||| ||||||||| ||||||| |||||||||||| | || || || ||| | ||||| ||||| |
|
|
| T |
36620641 |
cagataaatattgttaagctttatggattttgcttgcac-aaaagaatcatgtttttaatctatcaatacat-gaaaagagaaagtttgttctcggtttt |
36620738 |
T |
|
| Q |
321 |
gtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagca |
392 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
36620739 |
gtatgaggatttagaagctgtggaattcaattgcagaaaaagacttaattgatgatgaagacattgttagca |
36620810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 39102556 - 39102195
Alignment:
| Q |
22 |
catatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtgg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||| |||| ||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
39102556 |
catatgatgacattattaaagcaaca-----ctttgacattagatatg-catcgtgacataagcatatggaagtttatacaagactcaattatcatgtgg |
39102463 |
T |
|
| Q |
122 |
cagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaag |
221 |
Q |
| |
|
|| | ||| ||||| |||| |||||||||||| || || ||||||||||||||| | | ||||| | || ||||||||||||||||||| |||||||| |
|
|
| T |
39102462 |
caaatttgcctccttaaagaa-cttcacaactattaagcagatgtgtcatcttttgatgcgagttttagaattgaagtgagaatattatcaaaaataaag |
39102364 |
T |
|
| Q |
222 |
cacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgtttt |
320 |
Q |
| |
|
|| ||||||||||||||||||||| |||| | ||||||| ||||||| | ||||||| || ||||||||| | || || || ||| | ||||| ||||| |
|
|
| T |
39102363 |
cagataaatattgttaagctttatggattttgcttgcac-aaaagaagcatgtttttaatatatcaatacat-gaaaagagaaagtttgttctcggtttt |
39102266 |
T |
|
| Q |
321 |
gtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagc |
391 |
Q |
| |
|
|||||| ||| |||||| |||| |||||||||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
39102265 |
gtatgaggatttagaagttgtggaattcaattgcagaaaaagacttaattgatgatgaagacattgttagc |
39102195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 8873786 - 8873881
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaa |
424 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| || | |||||| ||||||| ||||| |||||||| |
|
|
| T |
8873786 |
gatgaagaagctgtgaaattcaattgaagaaaaaaacataatggatgatgaagacattgttttca-ggcatgtgatttcagaagcacaaaagaagaa |
8873881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 424
Target Start/End: Complemental strand, 36620083 - 36619990
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaa |
424 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||| || |||||||| ||||||| ||||| |||||||| |
|
|
| T |
36620083 |
gatgaagaagctgtgaaattcaattgaagaaaaaaa--caatggatgatgaagacattgtt-gccagacatgtgatttcagaagcacaaaagaagaa |
36619990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 39102923 - 39103016
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaa |
424 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||| || | |||||| ||||||| ||||| |||||||| |
|
|
| T |
39102923 |
gatgaagaagctgtgaaattcaattgaagaaaaaaa--caatggatgatgaagacattgtt-gccagccatgtgatttcagaagcacaaaagaagaa |
39103016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 5225128 - 5225200
Alignment:
| Q |
352 |
tggagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaagaa |
424 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||||| |||||||| ||||| ||| || |||||||| |
|
|
| T |
5225128 |
tggagaaaaagacttgatggctgatgaagacattgttagcaggacatgtgttttcaagggcgcaaaagaagaa |
5225200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 22 - 392
Target Start/End: Original strand, 1257652 - 1258016
Alignment:
| Q |
22 |
catatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcatgtgg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
1257652 |
catatgatgacattattaaagcaaca-----ctttgacattagatattgcatcgtgacataagcatatgaaagtgtatacaagactcaattatcatgtgg |
1257746 |
T |
|
| Q |
122 |
cagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaag |
221 |
Q |
| |
|
| | ||| ||||| ||||||||||||| |||||| || ||||||||| ||||| | | ||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
1257747 |
ccaatttgccaccttaaagaaacttcacaaatatgaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaag |
1257846 |
T |
|
| Q |
222 |
cacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaag-aagctagttctttgtttt |
320 |
Q |
| |
|
|| |||||||||||||| |||||| ||| | |||||| ||||||||| ||||||| |||||||||||| | || ||||| ||| | ||||| ||||| |
|
|
| T |
1257847 |
cagataaatattgttaaactttatgaattttgtttgcac-aaaagaatcatgtttttaatctatcaatacat-gaaaaaagaaagtttgttctcggtttt |
1257944 |
T |
|
| Q |
321 |
gtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaatggatgatgaagacattgttagca |
392 |
Q |
| |
|
|||||| ||| ||||||||| | |||||||||| |||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
1257945 |
gtatgaggatttagaagctgaggaattcaattgcagaaaaggacttaattgatgatgaagacattgttagca |
1258016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 8745990 - 8746086
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattg--gagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaaga |
423 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||| || ||||||||||||||||||||||| || |||||||| ||||||| ||||| ||||||| |
|
|
| T |
8745990 |
gatgaagaagctgtgaaattcaattgaagaaaaaaaaatataatggatgatgaagacattgtt-gccagacatgtgatttcagaagcacaaaagaaga |
8746086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 8752325 - 8752421
Alignment:
| Q |
328 |
gatgtagaagctgtgaaattcaattg--gagaaaaagatttaatggatgatgaagacattgttagcatgacatgtggtttcagaggcacataagaaga |
423 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||| || ||||||||||||||||||||||| || |||||||| ||||||| ||||| ||||||| |
|
|
| T |
8752325 |
gatgaagaagctgtgaaattcaattgaagaaaaaaaaatataatggatgatgaagacattgtt-gccagacatgtgatttcagaagcacaaaagaaga |
8752421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 1452 - 1109
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||||||| || |||||||||| ||||||| ||| | ||| ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
1452 |
atagcatatgatgacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaa |
1353 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || | || ||||||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1352 |
gtggcaaggttgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaat |
1253 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| |
|
|
| T |
1252 |
aaagcaccgacatattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgt |
1154 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| ||||| ||||| |
|
|
| T |
1153 |
cttgtatgatgatgtaaaagtcgtggaattcaagtggaggaaaag |
1109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 6339 - 5990
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||| ||| || |||||||||| ||||||| || | ||| ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
6339 |
atagcatatgatgacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaa |
6240 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || | || ||||||||| | ||||||| ||||||||||||||| ||| || |||| |
|
|
| T |
6239 |
gtggcaaggttgttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaat |
6140 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
|||||||| | |||| || ||||||||| | |||| ||||||||||| ||||| |||||||||||||||||||| | || | | |||||| |||| ||| |
|
|
| T |
6139 |
aaagcacaaacatatcgtgaagctttatggtttctgcttgcacaaaa-gaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgt |
6041 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaa |
368 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||||||| |||| |
|
|
| T |
6040 |
cttgtatgatgatgtagaagccctgcaattcaagtggagaaaaagagttaa |
5990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 18739573 - 18739230
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||||||| || |||||||||| ||||||| ||| | ||| ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
18739573 |
atagcatatgatgacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaa |
18739474 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || | || ||||||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
18739473 |
gtggcaaggttgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaat |
18739374 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| |
|
|
| T |
18739373 |
aaagcaccgacatattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgt |
18739275 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| ||||| ||||| |
|
|
| T |
18739274 |
cttgtatgatgatgtaaaagtcgtggaattcaagtggaggaaaag |
18739230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 18744537 - 18744194
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||||||| || |||||||||| ||||||| ||| | ||| ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
18744537 |
atagcatatgatgacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaa |
18744438 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || | || ||||||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
18744437 |
gtggcaaggttgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaat |
18744338 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| |
|
|
| T |
18744337 |
aaagcaccgacatattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgt |
18744239 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaag |
362 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| ||||| ||||| |
|
|
| T |
18744238 |
cttgtatgatgatgtaaaagtcgtggaattcaagtggaggaaaag |
18744194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 18723846 - 18723497
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||| ||| || |||||||||| ||||||| || | ||| ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
18723846 |
atagcatatgatgacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaa |
18723747 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || | || ||||||||| | ||||||| ||||||||||||||| ||| || |||| |
|
|
| T |
18723746 |
gtggcaaggttgttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaat |
18723647 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
|||||||| | |||| || ||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||| | || | | |||||| |||| ||| |
|
|
| T |
18723646 |
aaagcacaaacatatagtgaagctttatggattctgcttgcacaaaa-gaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgt |
18723548 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaa |
368 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
18723547 |
cttgtatgatgatgtagaagccatgaaattcaagtggagaaaaagagttaa |
18723497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 18749498 - 18749149
Alignment:
| Q |
18 |
atagcatatgttgacattattaaagcaacataacactttgacattagatattacatcgagacatgagcacatgaaagtgtatacaagactcatttatcat |
117 |
Q |
| |
|
|||||||||| |||||| || ||||| ||| || |||||||||| ||||||| || | ||| ||||| ||| |||||| |||||| | || ||| || |
|
|
| T |
18749498 |
atagcatatgatgacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaa |
18749399 |
T |
|
| Q |
118 |
gtggcagagttgttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaat |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || | || ||||||||| | ||||||| ||||||||||||||| ||| || |||| |
|
|
| T |
18749398 |
gtggcaaggttgttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaat |
18749299 |
T |
|
| Q |
218 |
aaagcacataaatattgttaagctttatagattctacttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgt |
317 |
Q |
| |
|
|||||||| | ||||||| ||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||| | || | | |||||| |||| ||| |
|
|
| T |
18749298 |
aaagcacaaacatattgtgaagctttatggattctgcttgcacaaaa-gaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgt |
18749200 |
T |
|
| Q |
318 |
tttgtatgatgatgtagaagctgtgaaattcaattggagaaaaagatttaa |
368 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||||||| |||| |
|
|
| T |
18749199 |
cttgtatgatgatgtagaagccatggaattcaagtggagaaaaagagttaa |
18749149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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