View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_low_51 (Length: 229)

Name: NF5565_low_51
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_low_51
NF5565_low_51
[»] chr4 (9 HSPs)
chr4 (7-229)||(45774348-45774570)
chr4 (77-229)||(19721333-19721485)
chr4 (95-229)||(2295717-2295850)
chr4 (127-229)||(15476420-15476522)
chr4 (130-229)||(2242562-2242660)
chr4 (108-229)||(6008413-6008535)
chr4 (152-229)||(7208222-7208301)
chr4 (138-229)||(40217907-40217999)
chr4 (183-229)||(53018302-53018348)
[»] chr1 (8 HSPs)
chr1 (78-229)||(31513254-31513405)
chr1 (127-229)||(25294312-25294414)
chr1 (76-229)||(10443777-10443931)
chr1 (83-229)||(17116596-17116746)
chr1 (89-229)||(41828017-41828152)
chr1 (151-229)||(11767478-11767557)
chr1 (128-229)||(49899505-49899607)
chr1 (172-229)||(40694194-40694251)
[»] chr8 (3 HSPs)
chr8 (78-218)||(11789003-11789142)
chr8 (77-229)||(9410212-9410366)
chr8 (163-229)||(16591135-16591202)
[»] chr3 (5 HSPs)
chr3 (79-229)||(46978982-46979132)
chr3 (76-229)||(7628815-7628968)
chr3 (95-229)||(45472807-45472942)
chr3 (108-221)||(29324434-29324548)
chr3 (153-221)||(31518968-31519036)
[»] chr6 (3 HSPs)
chr6 (77-229)||(2031978-2032129)
chr6 (100-229)||(2987911-2988041)
chr6 (145-229)||(687777-687861)
[»] chr7 (5 HSPs)
chr7 (77-229)||(42040084-42040235)
chr7 (145-229)||(45647923-45648007)
chr7 (139-229)||(40837282-40837374)
chr7 (76-229)||(25310635-25310789)
chr7 (189-229)||(47843505-47843545)
[»] chr5 (6 HSPs)
chr5 (77-229)||(19099674-19099826)
chr5 (130-229)||(2627771-2627871)
chr5 (172-229)||(29230799-29230856)
chr5 (76-229)||(31113619-31113773)
chr5 (129-221)||(26565173-26565266)
chr5 (77-161)||(29230720-29230804)
[»] chr2 (5 HSPs)
chr2 (77-229)||(7018169-7018322)
chr2 (151-229)||(40498831-40498909)
chr2 (167-229)||(42794491-42794553)
chr2 (76-143)||(38221492-38221559)
chr2 (132-229)||(40364019-40364117)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 45774570 - 45774348
Alignment:
Q  7 ataatggcaaattattttcaattttgatttagtttgaattcattgctccctcaatatatccacttcatagctatgaagccccgatacagatacgggtgcg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45774570 ataatggcaaattattttcaattttgatttagtttgaattcattgctcgctcaatatatccacttcatagctatgaagccccgatacagatacgggtgcg 45774471  T
Q  107 agtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaacttataataatacttatct 206  Q
    |||| || ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45774470 agtatcaaacgatacggctacgcggatacatgaatttctttaaatttaggatacggtacggttaggatacattaacaaaaacttataataatacttatct 45774371  T
Q  207 gtatgtaaaatacttcaagaaaa 229  Q
     ||||||||||||||||||||||    
T  45774370 atatgtaaaatacttcaagaaaa 45774348  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 19721333 - 19721485
Alignment:
Q  77 ctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatac 176  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||  | | |||||||||  | |||| || || ||||||||||| || ||||| |||||    
T  19721333 ctatgaagctccgatacagatacgggtgcgggtacgatacgatatgggtacgcggatacgcggattttttaaaatttaggatacgatatggttaggatac 19721432  T
Q  177 attaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
     |||||||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  19721433 gttaacaaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaa 19721485  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 2295850 - 2295717
Alignment:
Q  95 gatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaacttataa 194  Q
    |||||||||||  |||  ||||||||| | | |||||||||| || ||| ||||| ||||||||||| |||||||| ||||| |||||||||| ||||||    
T  2295850 gatacgggtgcaggtaagatacgatacgggtacgcggatacacgattttttttaaatttaggatacgatacggttaggatacgttaacaaaaaattataa 2295751  T
Q  195 taatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||| |||||| ||||| |||||||||| |||||||    
T  2295750 taa-acttatatgtatataaaatacttgaagaaaa 2295717  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 15476420 - 15476522
Alignment:
Q  127 cgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaaga 226  Q
    ||||||||| ||||||| ||| | ||||||||||  |||||||| ||||| |||||||||| ||||||||| | |||| |||||||||||||||| ||||    
T  15476420 cgcggatacgtgaattttttttaatttaggatacaatacggttaggatacgttaacaaaaatttataataaaatttatatgtatgtaaaatacttgaaga 15476519  T
Q  227 aaa 229  Q
    |||    
T  15476520 aaa 15476522  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 2242562 - 2242660
Alignment:
Q  130 ggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    |||||||  ||||| || || ||||||||||  |||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  2242562 ggatacacaaattttttaaaatttaggatacaatacg-ttatgatacattaagaaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaa 2242660  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 6008535 - 6008413
Alignment:
Q  108 gtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaactt-ataataatacttatct 206  Q
    |||| ||||||||||| |  |||||||| ||||| | |  || ||||||||||| ||||| || ||||| | |||||||| || ||| ||| |||||| |    
T  6008535 gtacgatacgatacagatatgcggatacgtgaatatttcaaaatttaggatacgatacggctaagatacttaaacaaaaaatttatattaaaacttatat 6008436  T
Q  207 gtatgtaaaatacttcaagaaaa 229  Q
    ||||||||||||||| |||||||    
T  6008435 gtatgtaaaatacttgaagaaaa 6008413  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 7208222 - 7208301
Alignment:
Q  152 ttaggatacggtacggttatgatacattaac--aaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    |||||||||| |||||||| |||||||||||  ||||| ||||  ||| |||||| ||||||||||||| || |||||||    
T  7208222 ttaggatacgatacggttaggatacattaacaaaaaaaattatcctaaaacttatatgtatgtaaaatatttgaagaaaa 7208301  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 40217999 - 40217907
Alignment:
Q  138 gaatttctttaagtttaggatacggtacggttatgatacattaacaaaa-acttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    |||||| || || ||||||||||| ||||| || ||||| ||||||||| | ||||| ||| |||||| ||||| |||||||||| |||||||    
T  40217999 gaattttttgaaatttaggatacgatacggctaagatacgttaacaaaatatttatactaaaacttatatgtatataaaatacttgaagaaaa 40217907  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 53018302 - 53018348
Alignment:
Q  183 aaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  53018302 aaaaaattataataaaacttatatgtatgtaaaatacttgaagaaaa 53018348  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 31513254 - 31513405
Alignment:
Q  78 tatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgataca 177  Q
    ||||||||| ||||||||||||  |||||||||  ||||||||||| | ||| |||||  |||||| || || |||| |||||  ||||||||||||||     
T  31513254 tatgaagcctcgatacagatacaagtgcgagtatgatacgatacaggtacgcagatacgcgaattttttaaaatttaagatacaatacggttatgatacg 31513353  T
Q  178 ttaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    |||||||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  31513354 ttaacaaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaa 31513405  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 25294312 - 25294414
Alignment:
Q  127 cgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaaga 226  Q
    |||||||||| | |||| || || ||||||||||| |||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  25294312 cgcggatacacgcattttttaaaatttaggatacgatacggttatgatacgttaacaaaaatttataataaaacttatatgtatgtaaaatacttcaaga 25294411  T
Q  227 aaa 229  Q
    |||    
T  25294412 aaa 25294414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 10443931 - 10443777
Alignment:
Q  76 gctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgata 175  Q
    |||||||||||| |||||  ||||||||||| |||| ||||||||||| | ||||||||| || |||| ||||| ||||||||||| ||||| |||||||    
T  10443931 gctatgaagcccggatacgaatacgggtgcgggtacgatacgatacaggtacgcggatacgtggatttttttaaatttaggatacgatacggctatgata 10443832  T
Q  176 cattaacaaaaactt-ataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
      ||||| |||  || ||| ||| |||||| ||||| |||||||||| |||||||    
T  10443831 agttaacgaaattttcatactaaaacttatatgtatataaaatacttgaagaaaa 10443777  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 17116746 - 17116596
Alignment:
Q  83 agccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaac 182  Q
    ||||||||||| |||| ||||||| |||| ||||||||| | | |||||||||  |||||| ||||| |||| |||||| |||||||| ||||| |||||    
T  17116746 agccccgatacggatatgggtgcgggtacaatacgatacgggtacgcggatacgcgaatttttttaaatttaagatacgatacggttaggatacgttaac 17116647  T
Q  183 aaaaacttataataatacttatctg----tatgtaaaatacttcaagaaaa 229  Q
    ||||| ||||||| | |||||| ||    |||||||||||||| |||||||    
T  17116646 aaaaatttataattaaacttatatgtatatatgtaaaatacttaaagaaaa 17116596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 229
Target Start/End: Complemental strand, 41828152 - 41828017
Alignment:
Q  89 gatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaac 188  Q
    |||||||||||||||||| |||| |||||     | | ||||||||||  ||||| ||||| ||||||||||| |||| ||| ||||  |||| |||||     
T  41828152 gatacagatacgggtgcgggtacgatacg-----ggtacgcggatacacaaatttttttaaatttaggatacgatacgattaagataagttaataaaaat 41828058  T
Q  189 ttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  41828057 ttataataaaacttatatgtatgtaaaatacttgaagaaaa 41828017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 11767478 - 11767557
Alignment:
Q  151 tttaggatacggtacggttatgatacattaacaaaa-acttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||||||||| |||||||| ||||| |||||||||   ||||| ||| || ||| |||||||||||||||| |||||||    
T  11767478 tttaggatacgatacggttaagatacgttaacaaaatttttatactaaaacatatatgtatgtaaaatacttgaagaaaa 11767557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 49899607 - 49899505
Alignment:
Q  128 gcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaa-acttataataatacttatctgtatgtaaaatacttcaaga 226  Q
    |||||||| ||| ||| || || ||||||||||| ||  |||| ||||||||||| ||| | ||||| ||| |||||| |||| ||||||||||| ||||    
T  49899607 gcggatacgtgatttttttaaaatttaggatacgataaagttaagatacattaaccaaatatttatactaaaacttatatgtaagtaaaatacttaaaga 49899508  T
Q  227 aaa 229  Q
    |||    
T  49899507 aaa 49899505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 40694251 - 40694194
Alignment:
Q  172 gatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||| |||||||||| ||||||| | |||||| | |||||||||||||| |||||||    
T  40694251 gatacgttaacaaaaatttataatgaaacttatatttatgtaaaatacttgaagaaaa 40694194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 11789003 - 11789142
Alignment:
Q  78 tatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgataca 177  Q
    |||||||||||||||| |||||||||||| |||| |||| |||||| | ||| ||||| ||||||| || || ||||||||||| |||||||| |||||     
T  11789003 tatgaagccccgatacggatacgggtgcgggtacgatacaatacaggtacgcagatacgtgaattt-ttaaaatttaggatacgatacggttaggatacg 11789101  T
Q  178 ttaacaaaaacttataataatacttatctgtatgtaaaata 218  Q
    |||||||||  ||||||||| |||||| |||||||||||||    
T  11789102 ttaacaaaattttataataaaacttatatgtatgtaaaata 11789142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 9410366 - 9410212
Alignment:
Q  77 ctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttcttta--agtttaggatacggtacggttatgat 174  Q
    |||||||||| |||||| |||| ||||||  |||| ||||||||| | | | |||||||  || ||| |||   | ||||||||||| |||||||| |||    
T  9410366 ctatgaagcctcgatacggataggggtgctggtacgatacgatacgggtacacggatacgcgatttttttttttaatttaggatacgatacggttaagat 9410267  T
Q  175 acattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    || |||||||||| ||||||||| |||||| |||||| ||||||||| |||||||    
T  9410266 acgttaacaaaaaattataataaaacttatatgtatgaaaaatacttgaagaaaa 9410212  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 16591135 - 16591202
Alignment:
Q  163 tacggttatgatacattaacaaaaactt-ataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    |||||||| ||||| |||||||||| || ||||||| |||||| || ||||||||||||| |||||||    
T  16591135 tacggttaagatacgttaacaaaaattttataataaaacttatatgcatgtaaaatacttgaagaaaa 16591202  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 46978982 - 46979132
Alignment:
Q  79 atgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacat 178  Q
    ||||||| ||||||| |||||||||||| |||| ||||||||  | | |||||||||  |||||| ||||| ||||||||| | |||||| | ||||| |    
T  46978982 atgaagctccgatacggatacgggtgcgggtacgatacgatatggatacgcggatacgcgaatttttttaaatttaggatatgatacggtcaggatacgt 46979081  T
Q  179 taacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||||||| ||||||||| | ||||||||||||||||||||  |||||||    
T  46979082 taacaaaaatttataataaaatttatctgtatgtaaaatactagaagaaaa 46979132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 7628815 - 7628968
Alignment:
Q  76 gctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgata 175  Q
    |||||||||||||||||| ||||||| ||||||||| ||||| ||| | | ||| |||||  |||||| || || ||||||||||  |||||||| ||||    
T  7628815 gctatgaagccccgatacggatacggttgcgagtacgatacggtacgggtacgcagatacgcgaattttttaaaatttaggatacaatacggttaggata 7628914  T
Q  176 cattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    | |||||||||| ||||||| | |||||| ||||||||||| |||| |||||||    
T  7628915 cgttaacaaaaatttataattaaacttatatgtatgtaaaacacttgaagaaaa 7628968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 45472942 - 45472807
Alignment:
Q  95 gatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaa-acttata 193  Q
    ||||||||||||||||| ||||||||| | | ||||||||   |||||| || || ||||||||||| || || || ||||  |||||||||   |||||    
T  45472942 gatacgggtgcgagtacgatacgatacgggtacgcggatatgcgaattttttaaaatttaggatacgatatggctaagatatgttaacaaaatttttata 45472843  T
Q  194 ataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
     ||| |||||| |||||||||||||||| |||||||    
T  45472842 ttaaaacttatatgtatgtaaaatacttgaagaaaa 45472807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 29324548 - 29324434
Alignment:
Q  108 gtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaactt-ataataatacttatct 206  Q
    |||| ||||||||| | | | |||||||  |||||  ||||| ||||||||||| | ||||||||||||||| ||||||| || ||||| | |||||| |    
T  29324548 gtacgatacgatacgggtacacggatacgcgaattattttaaatttaggatacgattcggttatgatacattgacaaaaaattcataatgaaacttatat 29324449  T
Q  207 gtatgtaaaatactt 221  Q
    | |||||||||||||    
T  29324448 gcatgtaaaatactt 29324434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 31519036 - 31518968
Alignment:
Q  153 taggatacggtacggttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatactt 221  Q
    |||||| || |||||||| |||||||||| ||||| ||||||||| |||||  || |||||||||||||    
T  31519036 taggatgcgatacggttaagatacattaataaaaaattataataaaacttaaatgcatgtaaaatactt 31518968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 2031978 - 2032129
Alignment:
Q  77 ctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatac 176  Q
    |||||||||||| |||| |||||||||||| |||| |||||| ||   |  ||||||||   ||||| ||||| ||||||||||| |||  ||| |||||    
T  2031978 ctatgaagccccaatacggatacgggtgcgggtacgatacgaaacgagtatgcggatacgc-aatttttttaaatttaggatacgatacaattaggatac 2032076  T
Q  177 attaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  2032077 attaacaaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaa 2032129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 2987911 - 2988041
Alignment:
Q  100 gggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaac-ttataataat 198  Q
    |||| ||||||| ||||||||| | | | ||||||||||||||| |  || ||||||||||| ||||| || ||||| ||||||||||| ||||| |||     
T  2987911 gggtacgagtacgatacgatacgggtacacggatacatgaatttttcaaaatttaggatacgatacggctaagatacgttaacaaaaacattatactaaa 2988010  T
Q  199 acttatctgtatgtaaaatacttcaagaaaa 229  Q
     ||||| |||||||||||||||| |||||||    
T  2988011 ccttatatgtatgtaaaatacttgaagaaaa 2988041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 687777 - 687861
Alignment:
Q  145 tttaagtttaggatacggtacggttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||| ||||||||| | |||||||| |||||  || |||||| ||||||||| | |||| ||||||||||||| || |||||||    
T  687777 tttaattttaggatatgatacggttaggatacgataccaaaaatttataataaaatttatatgtatgtaaaataattgaagaaaa 687861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 42040084 - 42040235
Alignment:
Q  77 ctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatac 176  Q
    |||||||||| |||||| |||||||||||| || | ||||||||| | |  |||||||     |||| ||||| ||||||||||| |||||||| |||||    
T  42040084 ctatgaagccacgatacggatacgggtgcgggtgcgatacgatacgggtatgcggatatgcatatttttttaaatttaggatacgatacggttaggatac 42040183  T
Q  177 attaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
     |||||||||| ||||||||| |||||| ||||||| |||||||| |||||||    
T  42040184 gttaacaaaaatttataataaaacttatatgtatgt-aaatacttgaagaaaa 42040235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 45647923 - 45648007
Alignment:
Q  145 tttaagtttaggatacggtacggttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||| ||||||||||||||| |||| ||||||| |||||||| ||||||||| |||||||| |||||||||||||| |||||||    
T  45647923 tttaaatttaggatacggtacagttaggatacatgaacaaaaatttataataaaacttatctatatgtaaaatacttgaagaaaa 45648007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 40837374 - 40837282
Alignment:
Q  139 aatttctttaagtttaggatacggtacggttatgatacattaaca-aaaacttataataatacttatctgtatgt-aaaatacttcaagaaaa 229  Q
    ||||| ||||| ||||||||||| |||||||| |||||||||||| |||| ||||| ||| |||||| ||||||| ||||||||| |||||||    
T  40837374 aatttttttaaatttaggatacgatacggttaagatacattaacaaaaaatttatactaaaacttatatgtatgtaaaaatacttgaagaaaa 40837282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 25310635 - 25310789
Alignment:
Q  76 gctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgata 175  Q
    |||||||||||| ||||  |||| ||||||  |||| ||||||||  |   | |||||||  |||||| ||||| ||||||||||| ||| |||| ||||    
T  25310635 gctatgaagcccggataatgatatgggtgccggtacgatacgatatgggcacacggatactcgaatttttttaaatttaggatacgatacagttaagata 25310734  T
Q  176 cattaacaaaaa-cttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    | ||||||||||  ||||| ||| |||||| ||||||||||||| || |||||||    
T  25310735 cgttaacaaaaatattatactaaaacttatatgtatgtaaaatatttgaagaaaa 25310789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 47843505 - 47843545
Alignment:
Q  189 ttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  47843505 ttataataaaacttatatgtatgtaaaatacttgaagaaaa 47843545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 19099674 - 19099826
Alignment:
Q  77 ctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatac 176  Q
    ||||||||||  ||||| |||||||||| |  ||  ||||||||| | | ||  |||||  |||||| || || ||||||||||| ||||||||||||||    
T  19099674 ctatgaagccttgatacggatacgggtgtggatatgatacgatacgggtacgtagatacgcgaattttttaaaatttaggatacgatacggttatgatac 19099773  T
Q  177 attaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
     |||||||||| ||||| ||| |||||| |||||||||||||||| |||||||    
T  19099774 gttaacaaaaatttatagtaaaacttatatgtatgtaaaatacttgaagaaaa 19099826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 2627771 - 2627871
Alignment:
Q  130 ggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaactt-ataataatacttatctgtatgtaaaatacttcaagaaa 228  Q
    |||||||  ||||| || || ||||||||||| |||||||| ||||| |||||||||| || ||| ||| |||||| |||||||||||||||||||||||    
T  2627771 ggatacacaaattttttaaaatttaggatacgatacggttaagatacgttaacaaaaattttatactaaaacttatatgtatgtaaaatacttcaagaaa 2627870  T
Q  229 a 229  Q
    |    
T  2627871 a 2627871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 29230799 - 29230856
Alignment:
Q  172 gatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||| |||||||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  29230799 gatacgttaacaaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaa 29230856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 31113619 - 31113773
Alignment:
Q  76 gctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgata 175  Q
    |||| ||||||| ||||| |||| ||||||  |||| |||| |||  | | |||||||||| |||||| ||||| ||||||||||| ||||     ||||    
T  31113619 gctaagaagcccggatacggatatgggtgcaggtacgatacaatatgggtacgcggatacacgaatttttttaaatttaggatacgatacgtccgagata 31113718  T
Q  176 cattaacaaaaa-cttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    | ||||||||||  ||||| ||| |||||| |||||| ||||||||| |||||||    
T  31113719 cgttaacaaaaattttatactaaaacttatttgtatggaaaatacttgaagaaaa 31113773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 26565266 - 26565173
Alignment:
Q  129 cggatacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaactt-ataataatacttatctgtatgtaaaatactt 221  Q
    |||||||| |||||| |  || ||||||||||| ||| |||| ||||| |||||||||| || ||| ||| |||||  ||||||||||||||||    
T  26565266 cggatacacgaatttttaaaaatttaggatacgatacagttaagatacgttaacaaaaatttaatactaaaacttaaatgtatgtaaaatactt 26565173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 29230720 - 29230804
Alignment:
Q  77 ctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacg 161  Q
    ||||||||||||| |||| ||| ||||||| |||  |||| |||| | | |||||||||  |||||| ||||| |||||||||||    
T  29230720 ctatgaagccccgttacaaatatgggtgcgggtatgatacaatacgggtacgcggatacgcgaatttttttaaatttaggatacg 29230804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 229
Target Start/End: Complemental strand, 7018322 - 7018169
Alignment:
Q  77 ctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaatttctttaagtttaggatacggtacggttatgatac 176  Q
    ||||||||||| ||||   ||||||||| | |||| ||| ||||||| |   || |||||||| ||| ||||| ||||||||||| ||||| || |||||    
T  7018322 ctatgaagccctgatattaatacgggtgtgggtacgatatgatacaggtatacgaatacatgattttttttaaatttaggatacgatacggctaagatac 7018223  T
Q  177 attaacaaaa-acttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
     |||||||||   ||||| ||| |||||  |||||||||||||||| |||||||    
T  7018222 gttaacaaaatttttatactaaaacttacatgtatgtaaaatacttgaagaaaa 7018169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 40498909 - 40498831
Alignment:
Q  151 tttaggatacggtacggttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    ||||||||||| ||| | || ||||| |||| ||||| ||||| ||| |||||| |||||||||||||||| |||||||    
T  40498909 tttaggatacgatacagctaagatacgttaaaaaaaatttatactaaaacttatatgtatgtaaaatacttgaagaaaa 40498831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 42794491 - 42794553
Alignment:
Q  167 gttatgatacattaacaaaaacttataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    |||| ||||| |||||||||| ||||||||| |||| | |||||||||||||||| |||||||    
T  42794491 gttaggatacgttaacaaaaatttataataaaacttgtatgtatgtaaaatacttgaagaaaa 42794553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 38221492 - 38221559
Alignment:
Q  76 gctatgaagccccgatacagatacgggtgcgagtaccatacgatacagctgcgcggatacatgaattt 143  Q
    ||||||||| |  ||||||||||||||| ||||||| ||||||||| | | ||||||||| |||||||    
T  38221492 gctatgaaggctggatacagatacgggtacgagtactatacgatacgggtacgcggatacgtgaattt 38221559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 40364117 - 40364019
Alignment:
Q  132 atacatgaatttctttaagtttaggatacggtacggttatgatacattaacaaaaactt-ataataatacttatctgtatgtaaaatacttcaagaaaa 229  Q
    |||| ||||||| || || ||||||||||| ||||  || ||||| |||||||||| || ||| ||| |||||| |||| ||||||||||| |||||||    
T  40364117 atacgtgaattttttaaaatttaggatacgatacgactaagatacgttaacaaaaaatttatactaaaacttatatgtacgtaaaatacttgaagaaaa 40364019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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