View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_low_52 (Length: 227)

Name: NF5565_low_52
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_low_52
NF5565_low_52
[»] chr6 (11 HSPs)
chr6 (1-205)||(29842384-29842588)
chr6 (1-143)||(29828939-29829081)
chr6 (141-205)||(29827572-29827636)
chr6 (145-205)||(2186400-2186460)
chr6 (141-205)||(28150758-28150822)
chr6 (145-205)||(26850307-26850367)
chr6 (143-205)||(28096986-28097048)
chr6 (145-205)||(25075462-25075522)
chr6 (165-205)||(28141121-28141161)
chr6 (144-208)||(28327061-28327125)
chr6 (144-208)||(28504697-28504761)
[»] chr1 (2 HSPs)
chr1 (145-202)||(5922014-5922071)
chr1 (144-205)||(26137465-26137526)
[»] chr4 (2 HSPs)
chr4 (145-205)||(18678101-18678161)
chr4 (145-205)||(18688158-18688218)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 29842384 - 29842588
Alignment:
Q  1 taaactcagcacctccatactcatgtagttcctatcggccataaataatttacaagttcaatttagcaagaaaaattacactatactatgaaatatgtag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29842384 taaactcagcacctccatactcatgtagttcctatcggccattaataatttacaagttcaatttagcaagaaaaattacactatactatgaaatatgtag 29842483  T
Q  101 taatattatcacagaaaaaggaatacaaaacctgcttcagtagaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttct 200  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29842484 taatattatcacagaaaaaggaaatcaaaacctgcttcagtagaaccacaacctactatgctttccaggctctttcgttgattctggtcgtacaatttct 29842583  T
Q  201 ttacc 205  Q
    |||||    
T  29842584 ttacc 29842588  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 29829081 - 29828939
Alignment:
Q  1 taaactcagcacctccatactcatgtagttcctatcggccataaataatttacaagttcaatttagcaagaaaaattacactatactatgaaatatgtag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29829081 taaactcagcacctccatactcatgtagttcctatcggccattaataatttacaagttcaatttaggaagacaaattacactatactatgaaatatgtag 29828982  T
Q  101 taatattatcacagaaaaaggaatacaaaacctgcttcagtag 143  Q
    |||||||| |||| ||||| |||  ||||||||| ||||||||    
T  29828981 taatattaacacacaaaaaagaaatcaaaacctgattcagtag 29828939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 29827636 - 29827572
Alignment:
Q  141 tagaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  29827636 tagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaatttctttacc 29827572  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 2186460 - 2186400
Alignment:
Q  145 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    |||||||||||||| | |||||||||||||| | ||||||||||||||| |||||||||||    
T  2186460 accacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacc 2186400  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 28150822 - 28150758
Alignment:
Q  141 tagaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    ||||||||||||||  |  |||| ||||||||||| | |||||||||||||||||||||||||||    
T  28150822 tagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacc 28150758  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 26850367 - 26850307
Alignment:
Q  145 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    |||||||||||||  || |||||||||||||  ||||||||||||| || |||||||||||    
T  26850367 accacaacctactgcgccttccaggctctttaattgattcttgtcggacgatttctttacc 26850307  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 28096986 - 28097048
Alignment:
Q  143 gaaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    |||| ||||||| ||| | |||||||| ||||| | ||||||||||| |||||||||||||||    
T  28096986 gaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacc 28097048  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 25075522 - 25075462
Alignment:
Q  145 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    |||||||||||||| | | ||||||||||||  ||||||| ||||| || |||||||||||    
T  25075522 accacaacctactacgttctccaggctctttaattgattcatgtcggacgatttctttacc 25075462  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 28141161 - 28141121
Alignment:
Q  165 ccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    ||||||||||| | |||||||||||| ||||||||||||||    
T  28141161 ccaggctcttttggtgattcttgtcgaacaatttctttacc 28141121  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 28327125 - 28327061
Alignment:
Q  144 aaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacctat 208  Q
    |||||||||||||||   |||||||| |||||    ||||||||||| |||||||||||||||||    
T  28327125 aaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctat 28327061  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 28504761 - 28504697
Alignment:
Q  144 aaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacctat 208  Q
    |||||||||||||||   |||||||| |||||    ||||||||||| |||||||||||||||||    
T  28504761 aaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctat 28504697  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 5922014 - 5922071
Alignment:
Q  145 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttcttt 202  Q
    |||| ||||||||  |||||||||||||||||| |||||||||||  |||||||||||    
T  5922014 accataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttt 5922071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 26137526 - 26137465
Alignment:
Q  144 aaccacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    ||||||||||||||  | |||||||| ||||| | |||||||||||| ||||||||||||||    
T  26137526 aaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacc 26137465  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 18678101 - 18678161
Alignment:
Q  145 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    |||||||||||||| ||||| |||||||||| | ||||||||  || || |||||||||||    
T  18678101 accacaacctactacgcttttcaggctctttgggtgattctttccggacgatttctttacc 18678161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 18688158 - 18688218
Alignment:
Q  145 accacaacctactatgctttccaggctctttcgttgattcttgtcgtacaatttctttacc 205  Q
    ||||||||| |||| ||||| |||||||||| | ||||||||  || ||||||||||||||    
T  18688158 accacaaccgactacgcttttcaggctctttaggtgattctttccggacaatttctttacc 18688218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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