View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_54 (Length: 222)
Name: NF5565_low_54
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 48585831 - 48586036
Alignment:
| Q |
1 |
aagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttcttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585831 |
aagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttcttttt |
48585930 |
T |
|
| Q |
101 |
attatttattgagtgattttcttcttcaaagttggagatacctatagcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585931 |
attatttattgagtgattttcttcttcaaagttggagatacctatagcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtg |
48586030 |
T |
|
| Q |
201 |
tcacag |
206 |
Q |
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|||||| |
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| T |
48586031 |
tcacag |
48586036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 48640404 - 48640495
Alignment:
| Q |
1 |
aagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48640404 |
aagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt |
48640495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48662038 - 48662100
Alignment:
| Q |
1 |
aagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag |
63 |
Q |
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| T |
48662038 |
aagacactttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggag |
48662100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 48629349 - 48629401
Alignment:
| Q |
8 |
tttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaag |
60 |
Q |
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| T |
48629349 |
tttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaag |
48629401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 48667637 - 48667689
Alignment:
| Q |
11 |
cctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag |
63 |
Q |
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| T |
48667637 |
cctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggag |
48667689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48617831 - 48617776
Alignment:
| Q |
1 |
aagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagaga |
56 |
Q |
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|||| ||||| |||||| || |||| ||||||||||||||||||||||| |||||| |
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| T |
48617831 |
aagacactttgctagtctaagaagagggtttatgtgtccttgtgctggataagaga |
48617776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 25892522 - 25892445
Alignment:
| Q |
17 |
ccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattttt |
94 |
Q |
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|||| ||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| || || ||||||| |
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| T |
25892522 |
ccaagaagatggtttaggtgtcgttgaaatggaaaagagacaaggaggagcttaatgggatctttgtttgccattttt |
25892445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19665187 - 19665125
Alignment:
| Q |
1 |
aagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag |
63 |
Q |
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|||| ||||| |||||| || |||| ||||||||||||||||||||||| | |||| |||||| |
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| T |
19665187 |
aagacactttgctagtctaagaagagggtttatgtgtccttgtgctggatatgagataaggag |
19665125 |
T |
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