View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_57 (Length: 208)
Name: NF5565_low_57
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 11349995 - 11350152
Alignment:
| Q |
30 |
tgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataagagac |
129 |
Q |
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| T |
11349995 |
tgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataagagac |
11350094 |
T |
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| Q |
130 |
aaaggaattagtgaaataagtgtgaaattttttgaagtaagagcaaatccatacaatctttt |
191 |
Q |
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| T |
11350095 |
aaaggaattagtgaaataagtgtgaaaaaatttg----aagagcaaatccatacaatctttt |
11350152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 7458498 - 7458660
Alignment:
| Q |
30 |
tgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataagagac |
129 |
Q |
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| T |
7458498 |
tgttagaagaataatcactaaatgcatgttagaagaataatcaacaatcatttcacatgcagcaactacaccttatagaagaaacacaaaaataagagac |
7458597 |
T |
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| Q |
130 |
aaaggaattagtgaaataagtgtgaa-attttttgaagtaagagcaaatccatacaatctttt |
191 |
Q |
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| T |
7458598 |
aaaggaattagtgaaataagtgtgaattttttttgaagtaagagcaaatccatacaatctttt |
7458660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 31873776 - 31873619
Alignment:
| Q |
30 |
tgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataagagac |
129 |
Q |
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| T |
31873776 |
tgttagaagaataatcactaaatgcatggtagaagaataatcaacagtcaattcacatgcagcaactacaccttatagaaggaacacaaaaataagagac |
31873677 |
T |
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| Q |
130 |
aaaggaattagtgaaataagtgtgaaattttttgaagtaagagcaaatccatacaatc |
187 |
Q |
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| T |
31873676 |
aaacgaattagtgaaataagtgtgaaaaaatttgaagtaagagcaaatccatacaatc |
31873619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 18768263 - 18768148
Alignment:
| Q |
39 |
aataatcactaaatgcatgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaaggattacaaaaataagagacaaaggaat |
137 |
Q |
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| T |
18768263 |
aataatcactacatgcatgttataagaatatttaccaatcaatttacatgtcagcaactacaccttatagaaggaacacaaaaataagagacaaaggaat |
18768164 |
T |
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| Q |
138 |
tagtgaaataagtgtg |
153 |
Q |
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| T |
18768163 |
tagtgaaataagtgtg |
18768148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 18782074 - 18782003
Alignment:
| Q |
39 |
aataatcactaaatgcatgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaa |
109 |
Q |
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||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
18782074 |
aataatcactacatgcatgtaagaagaataattaccaatcaattcacatgtcagcaactataccttatagaa |
18782003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 18509022 - 18509122
Alignment:
| Q |
54 |
catgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaaggattacaaaaataagagacaaaggaattagtgaaataagtgt |
152 |
Q |
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|||| |||||||||||||| ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18509022 |
catgctagaagaataattaccaatcaattcacatgtcggcaactacaccttaagaaaggaacacaaaaataagagacaaaggaattagtgaaataagtgt |
18509121 |
T |
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| Q |
153 |
g |
153 |
Q |
| |
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| |
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|
| T |
18509122 |
g |
18509122 |
T |
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