View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_6 (Length: 502)
Name: NF5565_low_6
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 28789111 - 28789602
Alignment:
| Q |
1 |
taacgtcacacatcaacactctgtagttctagctatctcgattaaagaaaaattgattgattggtcaaaatttgaggacggacaagcatataaatttaat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28789111 |
taacgtcacacatcaacactctatagttctagctatctcgattaaagaaaaattgattgattggtcaaaatttgaggacggagaagcatataaatttaat |
28789210 |
T |
|
| Q |
101 |
caaacaaaaactccaaaaaccatcaatagacaatttaaacccaaagttttagttcactgatatccctaaatttgataacggtaacaaatagaaatgaatt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28789211 |
caaacaaaaactccaaaaagcatcaatagacaatttaaacccaaagttttagttcactgatatccctaaatttgataacagtaacaaatagaaatgaatt |
28789310 |
T |
|
| Q |
201 |
aattaaatagttcaagtaaaacaagcaaaaatttgcattgaaatatagaaggagggcattgatgagagtcttcacttgagaggaataaacctggaggagt |
300 |
Q |
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| T |
28789311 |
aattaaatagttcaagtaaaacaagcaaaaatttgcattgaaatgtagaaggagggcattgatgagagtcttcacttgagaggaataaacctggaggagt |
28789410 |
T |
|
| Q |
301 |
tagtagcaccgataccaggcctaccgtgcttaacaggcttgtaagagatcgagaattcagcaagatagtggccaatcatttcaggtttaatttcaacttg |
400 |
Q |
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| T |
28789411 |
tagtagcaccgataccaggcctaccgtgcttaaccggcttgtaagagatcgagaattcagcaagatagtggccaatcatttcaggtttaatttcaacttg |
28789510 |
T |
|
| Q |
401 |
attgaaggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacggaggtgagtcttcacaggttctg |
492 |
Q |
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| T |
28789511 |
attgaaggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacggaggtgattcctcactggttctg |
28789602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 102 - 492
Target Start/End: Complemental strand, 31248198 - 31247811
Alignment:
| Q |
102 |
aaacaaaaactccaaaaacc--atcaatagacaatttaaacccaaagttttagttcactgatatccctaaatttgataacggtaacaaatagaaatgaat |
199 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||| | | | ||||| || |||||||||||| | |
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| T |
31248198 |
aaacaaaaactccaaaaagctcataaatagacaatttaaacccaaaactttagttcactgatatcct--attgtcataacaatatcaaatagaaatggag |
31248101 |
T |
|
| Q |
200 |
taattaaatagttcaagtaaaacaagcaaaaatttgcattgaaatatagaaggagggcattgatgagagtcttcacttgagaggaataaacctggaggag |
299 |
Q |
| |
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| ||||||||||| |||||||||||||||| |||||||| ||| ||||| || |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
31248100 |
catttaaatagttccagtaaaacaagcaaaagtttgcattaaaagatagaggg---gcatcgatgacgatcttcacttgagaggaataaacctggaggag |
31248004 |
T |
|
| Q |
300 |
ttagtagcaccgataccaggcctaccgtgcttaacaggcttgtaagagatcgagaattcagcaagatagtggccaatcatttcaggtttaatttcaactt |
399 |
Q |
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| ||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||| ||||||||||||| |
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| T |
31248003 |
tgagtggcaccaataccaggcctaccatgcttaacaggcttgtaagagattgagaattcagccaaatagtgaccaatcatttcaggcttaatttcaactt |
31247904 |
T |
|
| Q |
400 |
gattgaaggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacggaggtgagtcttcacaggttctg |
492 |
Q |
| |
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| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
31247903 |
ggttgaaggtctttccattgtagacaccaatgatgctaccgatcatctcaggtacaatgatcatgttacggaggtgagtcctcacaggttctg |
31247811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 271 - 492
Target Start/End: Original strand, 44325802 - 44326023
Alignment:
| Q |
271 |
ttcacttgagaggaataaacctggaggagttagtagcaccgataccaggcctaccgtgcttaacaggcttgtaagagatcgagaattcagcaagatagtg |
370 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| || || |||||||||||||| || || |
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| T |
44325802 |
ttcacttgagaggaatgaacctggaggagtgagtagcaccaataccaggtctaccgtgcttaacaggcttgtatgaaattgagaattcagcaaggtaatg |
44325901 |
T |
|
| Q |
371 |
gccaatcatttcaggtttaatttcaacttgattgaaggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacgg |
470 |
Q |
| |
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|| ||||| |||||||| |||||||| || || |||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
44325902 |
accgatcatctcaggtttgatttcaacctggttaaaggtcttcccattgtacactccaataatgctcccaatcatctcaggtacaatgatcatgttacga |
44326001 |
T |
|
| Q |
471 |
aggtgagtcttcacaggttctg |
492 |
Q |
| |
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|| || ||| | |||||||||| |
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| T |
44326002 |
agatgggtcctaacaggttctg |
44326023 |
T |
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