View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5565_low_7 (Length: 492)
Name: NF5565_low_7
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_7 |
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| [»] scaffold0243 (1 HSPs) |
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| [»] scaffold1890 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0243 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 476
Target Start/End: Complemental strand, 21855 - 21389
Alignment:
| Q |
15 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
21855 |
aatatggaattgcatcaatatggaacatggaatgaatgggaatccagcaattataacataaccgatggaaaacaaaagaagcaatgcagaacttcaagca |
21756 |
T |
|
| Q |
115 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaaagcttcggccatactgaaaacaatatgaataagaatc |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||| |||||||| |
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|
| T |
21755 |
taaaacgacaattaatttggatttggaaccgtaacgtgaaagtaattaagcagcaataac-aaagcctcgaccattgtgaaaacaatatgcataagaatt |
21657 |
T |
|
| Q |
215 |
aaatcatagcagcaaaatataagcacagcaacatgaaagaagcaacgtgaattnnnnnnngaaataaaagacaattgaaacatcagaattgc------ta |
308 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |||| || |
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| T |
21656 |
aaatcatagcagcaaaatatgagcacagcaacatgaaagaagcaacttgaatt-aaaaaagaaataaaagacaattgagacatcagagttgcatgaaata |
21558 |
T |
|
| Q |
309 |
cagttttttc-aatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgagcagcaacgatgaaaataaagtaaacaatg |
407 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21557 |
aggttttttcaaaattatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgagcagcaacgatgaaaataaagtaaacaatg |
21458 |
T |
|
| Q |
408 |
caaaacttttgaattcaaagg-aaaatgcagaaactgaattgtaaattgcggtggctaggtcttggtttt |
476 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21457 |
caaaacttttgaattcaaaggaaaaatgca-aaactgaattgtaaattgcggtggctaggtcttggtttt |
21389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 476
Target Start/End: Original strand, 19243489 - 19243954
Alignment:
| Q |
15 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
114 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
19243489 |
aatatggaattgcatcaatatggaacatggaatgaattggaatccagcaattataacaaaaccgatggaaaacaaaagaagcaatacagaacataaagca |
19243588 |
T |
|
| Q |
115 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaaagcttcggccatactgaaaacaatatgaataagaatc |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||| |||||||| |
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|
| T |
19243589 |
taaaacgacaattaatttggatttggaaccgtaacgtgaaagtaattaagcagcaataac-aaagcctcgaccattgtgaaaacaatatgcataagaatt |
19243687 |
T |
|
| Q |
215 |
aaatcatagcagcaaaatataagcacagcaacatgaaagaagcaacgtgaattnnnnnnngaaataaaagacaattgaaacatcagaattgc------ta |
308 |
Q |
| |
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||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| || |
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| T |
19243688 |
aaatcatagcagcaaaatataagcacaacaatatgaaagaagcaatgtgaatt-aaaaaagaaataaaagacaattgagacatcagaattgcatgaaata |
19243786 |
T |
|
| Q |
309 |
cagttttttcaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgagcagcaacgatgaaaataaagtaaacaatgc |
408 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19243787 |
aggtttttccaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgagcagcaacgatgaaaataaagtaaacaatgc |
19243886 |
T |
|
| Q |
409 |
aaaacttttgaattcaaagg-aaaatgcagaaactgaattgtaaattgcggtggctaggtcttggtttt |
476 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
19243887 |
aaaacttttgaattcaaaggaaaaatgcag-aactgaattgtaaattgtggtggctaggtcttggtttt |
19243954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 476
Target Start/End: Complemental strand, 39867518 - 39867067
Alignment:
| Q |
15 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
39867518 |
aatatggaattgcatcaatatggaacatggaatgaattgga--------------acataaccgatggaaaaccaaagaagcaatacagaacttaaagca |
39867433 |
T |
|
| Q |
115 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaaagcttcggccatactgaaaacaatatgaataagaatc |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||| |
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|
| T |
39867432 |
taaaacgacaattaatttggatttggaacaataacgtgaaagtaattaagcagcagtaacaaaagcctcggccatagtgaaaacaatatgcataagaatt |
39867333 |
T |
|
| Q |
215 |
aaatcatagcagcaaaatataagcacagcaacatgaaagaagcaacgtgaattnnnnnnngaaataaaagacaattgaaacatcagaattgc------ta |
308 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
39867332 |
aaatcatagcagcaaaatatgagcacaacaacatgaaagaagcaacgtgaatt-aaaaaagaaataaaagacaattgaaacatcagaattgcatgaaata |
39867234 |
T |
|
| Q |
309 |
cagttttttcaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgagcagcaacgatgaaaataaagtaaacaatgc |
408 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39867233 |
aggtttttccaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgagcagcaacgatgaaaataaagtaaacaatgc |
39867134 |
T |
|
| Q |
409 |
aaaacttttgaattcaaaggaaaatgcagaaactgaattgtaaattgcggtggctaggtcttggtttt |
476 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39867133 |
aaaacttttgaattcaaaggaaaatgcag-aactgaattgtaaattgcggtggctaggtcttggtttt |
39867067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1890 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold1890
Description:
Target: scaffold1890; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 194 - 476
Target Start/End: Original strand, 151 - 438
Alignment:
| Q |
194 |
aaaacaatatgaataagaatcaaatcatagcagcaaaatataagcacagcaacatgaaagaagcaacgtgaattnnnnnnngaaataaaagacaattgaa |
293 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
151 |
aaaacaatatgcataagaattaaatcatagcagcaaaatatgagcacaacaacatgaaagaagcaacgtgaattaaaaaa-gaaataaaagacaattgag |
249 |
T |
|
| Q |
294 |
acatcagaattgc------tacagttttttcaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgagcagcaacga |
387 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
250 |
acatcagaattgcatgaaataaggtttttccaatttatatatcaatcggcggctgcagatttaaattgagtgaatggaattaaaccatgagcagcaacga |
349 |
T |
|
| Q |
388 |
tgaaaataaagtaaacaatgcaaaacttttgaattcaaagg-aaaatgcagaaactgaattgtaaattgcggtggctaggtcttggtttt |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
350 |
tgaaaataaagtaaacaatgcaaaacttttgaattcaaaggaaaaatgcag-aactgaattgtaaattgcggtggctaggtcttggtttt |
438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 22705005 - 22704654
Alignment:
| Q |
15 |
aatatgaaattgcatcaatatggagcatggaatgaattggaatccagcaattatcacataatcgatggaaaacaaaagaagcaatgcagaacttaaagca |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22705005 |
aatatggaattgcatcaatatggaacatggaatgaattgga--------------acataaccgatggaaaacaaaagaagcaatacagaacttaaagca |
22704920 |
T |
|
| Q |
115 |
taaaacggcaattaatttggatttggaacagcgacgtgaaagtaattaagcagcaataacaaaagcttcggccatactgaaaacaat----atgaataag |
210 |
Q |
| |
|
||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||| ||||| |
|
|
| T |
22704919 |
taaaacgacaattaatttgtattcggagcagaaacgtgaaagtaattaagcagcaataacaaaagcctcggccatagtgaaaacagtatgcatgcataag |
22704820 |
T |
|
| Q |
211 |
aatcaaatcatagcagcaaaatataagcacagcaacatgaaagaagcaacgtgaattnnnnnnngaaataaaagacaattgaaacatcagaattgc---- |
306 |
Q |
| |
|
||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22704819 |
aattaaatcataacagcaaaatatgagcacaacaacatgaaagaagcaacgtgaatt-aaaaaagaaataaaagacaattgaaacatcagaattgcatga |
22704721 |
T |
|
| Q |
307 |
--tacagttttttcaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaa |
371 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22704720 |
aataaggtttttccaatttatatatcaatcggcagctgcagatttaaattgaatgaatggaattaaa |
22704654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 285 - 472
Target Start/End: Original strand, 105771 - 105963
Alignment:
| Q |
285 |
acaattgaaacatcagaattgc------tacagttttttcaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgag |
378 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105771 |
acaattgaaacatcagaattgcatgaaataaggtttttccaatttatatatcaatcggcggctgcagatttaaattgaatgaatggaattaaaccatgag |
105870 |
T |
|
| Q |
379 |
cagcaacgatgaaaataaagtaaacaatgcaaaacttttgaattcaaaggaaaatgcagaaactgaattgtaaattgcggtggctaggtcttgg |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
105871 |
cagcaacgatgaaaataaagtaaacaatgcaaaacttttgaattcaaaggaaaatgca-taagtgaattgtaaattgcggtggctaggtcttgg |
105963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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