View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_9 (Length: 482)
Name: NF5565_low_9
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 41324060 - 41324534
Alignment:
| Q |
1 |
tcaaggtagcgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacacacaaattcaaaaatgtggt |
100 |
Q |
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| T |
41324060 |
tcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacacacaaattcaaaaatgtggt |
41324159 |
T |
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| Q |
101 |
caatcaaaactgcgttcaaatgtgattattttgcattaggcctcgcgtaacatttttcaattcgtttgattttttacctgtagaatgccacaccatctaa |
200 |
Q |
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| T |
41324160 |
caatcaaaactgcgttcaaatgtgattattttgcattaggcctcgcgtaacatttttcaattcgtttgattttttacctgtagaatgccacaccatctaa |
41324259 |
T |
|
| Q |
201 |
taaatttcatgtcgactccatatgagagcttatcctctagtgcatgagagtatccacctgtattatgttacataattaaatttatcaatgaatttaggta |
300 |
Q |
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| T |
41324260 |
taaatttcatgtcgactccatatgagagcttatcctctagtgcatgagagtatccacctgtattatgttacataattaaatttatcaatgaatttaggta |
41324359 |
T |
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| Q |
301 |
gtattaatcttgttatttatgcaactcnnnnnnngcttgaaatttggaagtgatttctacttagtatatctagaaggatgcttnnnnnnntgtatatata |
400 |
Q |
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| T |
41324360 |
gtattaatcttgttatttatgcaactctttttttgcttgaaatttggaagtgatttctacttagtatatctagaaggatgcttaaaaaaatgtatatata |
41324459 |
T |
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| Q |
401 |
gtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
475 |
Q |
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| T |
41324460 |
gtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
41324534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41309453 - 41309534
Alignment:
| Q |
1 |
tcaaggtagcgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacaca |
82 |
Q |
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| T |
41309453 |
tcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatacaagggctattctctgcacaca |
41309534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 393 - 475
Target Start/End: Original strand, 41309754 - 41309836
Alignment:
| Q |
393 |
tatatatagtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
475 |
Q |
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| T |
41309754 |
tatatttagtgagtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatct |
41309836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 41309612 - 41309659
Alignment:
| Q |
176 |
acctgtagaatgccacaccatctaataaatttcatgtcgactccatat |
223 |
Q |
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| T |
41309612 |
acctggagaatgccacaccatctgataaatttcatgttaactccatat |
41309659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 27657558 - 27657492
Alignment:
| Q |
12 |
ggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgca |
78 |
Q |
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| T |
27657558 |
ggtctaagcttagtggtaaatgtctctattagagctacaatgcaatatacaagagctatcctctgca |
27657492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 27657379 - 27657326
Alignment:
| Q |
175 |
tacctgtagaatgccacaccatctaataaatttcatgtcgactccatatgagag |
228 |
Q |
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| T |
27657379 |
tacctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagag |
27657326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 27656779 - 27656723
Alignment:
| Q |
419 |
gtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
475 |
Q |
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| T |
27656779 |
gtttaccttgcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatct |
27656723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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