View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5566-Insertion-2 (Length: 768)
Name: NF5566-Insertion-2
Description: NF5566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5566-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 725; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 8 - 768
Target Start/End: Complemental strand, 29047768 - 29047008
Alignment:
| Q |
8 |
tctacaaggtcataggtgctgctaggagatttattactcccccgaagaattcttccaccaatgacttttccacctccaagagaaggacttgtctctttga |
107 |
Q |
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| T |
29047768 |
tctacaaggtcataggtgctgctaggagaattattactcccgcgaagaattcttccaccaacgacttttccacctccaagagaaggatttgtctctttga |
29047669 |
T |
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| Q |
108 |
ttacatagtccattgcagacgctgctgtgcctgcaaacgctttaacaactttcggagcagacggtccagatttcatctcatgcatcccaactgttacatt |
207 |
Q |
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| T |
29047668 |
ttacatagtccattgcagacgctgctgtgcctgcaaacgctttaacaactttcggagcagacggtccagatttcatctcatgcatcccaactgttacatt |
29047569 |
T |
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| Q |
208 |
tgatttcttttcctttccatcatttgatttaggaaggttgtgaaatgtgtgccttgactcatttttctttttcaacacattgttgaggatttgatttgta |
307 |
Q |
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| T |
29047568 |
tgatttcttttcctttccatcatttgatttaggaaggttgtgaaatgtgtgccttgactcatttttctttttcaacacattgttgaggatttgatttgta |
29047469 |
T |
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| Q |
308 |
aatgatgccggtaccggtatttgatcttgtgcaaggttttgatcggtattcatgaatccattgttgacgtagggttcttgcatagcaggaagagggtttg |
407 |
Q |
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| T |
29047468 |
aatgatgccggtaccggtatttgatcttgtgcaaggttttgatcggtattcatgaatccattgttgacgaagggttcttgcatagcaggaagagggtttg |
29047369 |
T |
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| Q |
408 |
aggctcttaaagaaggattatttgtaatgaataccttcaaaccaagttcacctttcgtgcgcgaaaaaatgcctttcttttcaagaggatagtgtaatac |
507 |
Q |
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| T |
29047368 |
aggctcttaaagaaggattatttgtaatgaataccttcaaaccaagttcacctttcgtgcgcgaaaaaatgcctttcttttcaagaggatagtgtaatac |
29047269 |
T |
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| Q |
508 |
aacagcatcagaatgtggaacaaatgaggttccagtgagcctaaccttaccaaggggaactttggagccattggttttgttatagtggtttatgcaggct |
607 |
Q |
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| T |
29047268 |
aacagcatcagaatgtggaacaaatgaggttccagtgagcttaaccttgccaaggggaattttggagccattggttttgttatagtggtttatgcaggct |
29047169 |
T |
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| Q |
608 |
tcaagattaaggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagatctttatctttagttgatgtacgaa |
707 |
Q |
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| T |
29047168 |
tcaagattaaggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagatctttatctttagttgttgtacgaa |
29047069 |
T |
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| Q |
708 |
atttctgatcatcaaattcaagttctacaaaagtagtagatgacccctctccatctttggc |
768 |
Q |
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| T |
29047068 |
atttctgatcatcaaattcaagttctacaaaagtagtagatgacccctctccatctttggc |
29047008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 437 - 561
Target Start/End: Original strand, 11705118 - 11705242
Alignment:
| Q |
437 |
aataccttcaaaccaagttcacctttcgtgcgcgaaaaaatgcctttcttttcaagaggatagtgtaatacaacagcatcagaatgtggaacaaatgagg |
536 |
Q |
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| T |
11705118 |
aataccttcaaaccaagctctccttttacgcgagaaaaggtgattttcttttccagagggtagtgcaatacaacagcatcagaaagtggcacaaatgagg |
11705217 |
T |
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| Q |
537 |
ttccagtgagcctaaccttaccaag |
561 |
Q |
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| T |
11705218 |
tttccgtgagacggaccttaccaag |
11705242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 740
Target Start/End: Original strand, 11705301 - 11705424
Alignment:
| Q |
617 |
aggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagatctttatctttagttgatgtacgaaatttctgat |
716 |
Q |
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||| ||| ||| ||||||||||| | |||| |||||||||| |||| |||||| ||| | |||||||| ||||| || | ||| ||||| ||||||| |
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| T |
11705301 |
aggcttggtaatttgcttggatcagcaatggtgaagtaaaatttctcgttccaaacaggattcagatctttttctttcgtagttgtccgaaacttctgat |
11705400 |
T |
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| Q |
717 |
catcaaattcaagttctacaaaag |
740 |
Q |
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| T |
11705401 |
catcaaaatgaagttccacaaaag |
11705424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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