View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5566_high_1 (Length: 336)
Name: NF5566_high_1
Description: NF5566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5566_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 29047764 - 29048072
Alignment:
| Q |
19 |
gtagaaccaatggactatcttttcgtacgagttgtgaaagctcgcgatcttccaaggatggatttgaccggtagccttgatccctatgtgattgtcaagg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29047764 |
gtagaaccaatggactatcttttcatacgagttgtgaaagctcgcgatcttccaaggatggatttgaccggtagccttgatccctatgtgattgtcaagg |
29047863 |
T |
|
| Q |
119 |
ttggaaacttcaaaggaactaccaaccactttgagaaaaacaatagtcctgaatggaacctggtgtttgcatttgccaaggagaatcaacaagcaactac |
218 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29047864 |
ttggaaacttcaaaggaacaaccaatcactttgagaaaaacaatagtcctgaatggaacctggtgtttgcatttgccaaggagaatcaacaagcaactac |
29047963 |
T |
|
| Q |
219 |
tcttgaagttgttatcaaagacaaggacacaatacatgatgattttgttggaactgtgaggtttgatctgtacgatgttcctaaacgtgttccacctgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29047964 |
tcttgaagttgttatcaaagacaaggacacaatacatgatgattttgttggaactgtgaggtttgatctgtacgatgttcctaaacgtgttccacctgat |
29048063 |
T |
|
| Q |
319 |
agtcctttg |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
29048064 |
agtcctttg |
29048072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 11704521 - 11704410
Alignment:
| Q |
212 |
caactactcttgaagttgttatcaaagacaaggacacaatacatgatgattttgttggaactgtgaggtttgatctgtacgatgttcctaaacgtgttcc |
311 |
Q |
| |
|
||||||| |||||||||| |||||||||| | ||||||| ||||| |||||| ||||||||||||| ||| | |||||||||| ||||||||| |
|
|
| T |
11704521 |
caactacgcttgaagttgaggtcaaagacaaaggtacaatactagatgaaactgttggtactgtgaggtttgttctccatgatgttcctacacgtgttcc |
11704422 |
T |
|
| Q |
312 |
acctgatagtcc |
323 |
Q |
| |
|
||| |||||||| |
|
|
| T |
11704421 |
accagatagtcc |
11704410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University