View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567-Insertion-3 (Length: 890)
Name: NF5567-Insertion-3
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 2094616 - 2094201
Alignment:
| Q |
8 |
agcatgatcatgtgatctcacaaaatgggatgcgcnnnnnnnnnagattaacaatgtgctttcatccttttaatttgttgttgagttcatgcatgtgact |
107 |
Q |
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| T |
2094616 |
agcatgattttgtgatctcacaaaatgggatgcg-attttttttagattaacaatgtgctttcatccttttaatttgttgttgagttcatgcatgtgact |
2094518 |
T |
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| Q |
108 |
agttcgtttgattaacatatgtagtgtataatgnnnnnnnaatgaattaattaactgatttaattgaaaaagcaattataaaatgtgtataaacctttct |
207 |
Q |
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| T |
2094517 |
agttcgtttgattaacatatgtagtgtataatgtttttt-aatgaatt---taactgatttaattgaaaaagcaattataaaatgtgtataaacctttct |
2094422 |
T |
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| Q |
208 |
tctcaaggatgaatgtgtgtaaacctaaagttttgtctttgcaactattttcaagcagtgaaataataata---ggcataagatttctctaaatattgta |
304 |
Q |
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| T |
2094421 |
tctcaaggatgaatgtgtgtaaacctaaagttatgtctttgcaactattttcaagcagtgaaataataataataggcataagatttctctaaatattgta |
2094322 |
T |
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| Q |
305 |
attaatccacacaaaacattatacaaagtaaacctacacaattagacatctctagtcagaatgcattcatagcatagtgcgtatgcaaatttgttgaata |
404 |
Q |
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| T |
2094321 |
attaatccacacaaaacattatacaaagtaaacctacacaattagacatctctagtcagaatgcattcatagcatagtgcgtatgcaaatttgttgaatg |
2094222 |
T |
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| Q |
405 |
gtggattggttttatattaac |
425 |
Q |
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| T |
2094221 |
gtggattggttttatattaac |
2094201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 520 - 730
Target Start/End: Complemental strand, 2094097 - 2093898
Alignment:
| Q |
520 |
ttcatatagaattgatcgcattattactcacatagaaacttaaggttacaaaagtgtaacacacagagtgatcaacaaaggttttctaccagctagatcc |
619 |
Q |
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| T |
2094097 |
ttcatatagaattgatcgcattattactcacatagaaacttaaggttacaaaagtgt----------gtgatcaacaa-ggtttcctaccagctagatcc |
2094009 |
T |
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| Q |
620 |
tgtacatgtgtcttttgatttttcttactcataagagtgaacaaaattttctatgaaatttgaaaagaataacttaccatttctttcaaaacaagacaca |
719 |
Q |
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| T |
2094008 |
ggtacatgtgtcttttgatttttcttactcataagagtgaacaaaattttctatgaaatttgaaaagaataacttaccatttctttgaaaacaagacaca |
2093909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 854 - 890
Target Start/End: Complemental strand, 2093775 - 2093739
Alignment:
| Q |
854 |
gttcaaattagtgttaattattactttgtcaaaatca |
890 |
Q |
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| T |
2093775 |
gttcaaattagtattaattattactttgtcaaaatca |
2093739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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