View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567-Insertion-4 (Length: 795)
Name: NF5567-Insertion-4
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 770; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 7 - 792
Target Start/End: Original strand, 42452431 - 42453216
Alignment:
| Q |
7 |
aggacactcgctagcaagtcggcgaaaagcaataatggaaatccaatatggaatgaaaaagatattttgtttgctgtggcagagccacttgatgaaatat |
106 |
Q |
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| T |
42452431 |
aggacactcgctagcaagtcggtgaaaagcaataatggaaatccaatatggaatgaaaaagatattttgtttgctgtggcagagccccttgatgaaatat |
42452530 |
T |
|
| Q |
107 |
tgtttttaactgtggagcaaggaacattggcaaggtgcaagaggttagggacatgtgtatttcctgtgaagaaggcacaaacaccattacaaaatccgga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452531 |
tgtttttaactgtggagcaaggaacattggcaaggtgcaagaggttagggacatgtgtatttcctgtgaagaaggcacaaacaccattacaaaatccgga |
42452630 |
T |
|
| Q |
207 |
tcgtcttgtaaccatggatgttatacagaatgaaagattttttgtcggtaagcttagtatgagggtcactttggacggtgggtatcatatgtttgatgac |
306 |
Q |
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| T |
42452631 |
tcgtcttgtaaccatggatgttatacagaatgaaagattttttgtcggtaagcttagtatgagggtcactttggacggcgggtatcatatgtttgatgac |
42452730 |
T |
|
| Q |
307 |
gatccacggtacagcactgatgtgaatccaacagacaatggggtctggagaccaaacattggagtttttgagatggggatattgaatgctacaggtcttc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452731 |
gatccacggtacagcactgatgtgaatccaacagacaatggggtctggagaccaaacattggagtttttgagatggggatattgaatgctacaggtcttc |
42452830 |
T |
|
| Q |
407 |
cagagatgaaacctcaaggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaa |
506 |
Q |
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| T |
42452831 |
cagagatgaaacctcaaggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaa |
42452930 |
T |
|
| Q |
507 |
gtggaatgagcaatactcttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgct |
606 |
Q |
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| T |
42452931 |
gtggaatgagcaatactcttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgct |
42453030 |
T |
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| Q |
607 |
ggagcaaacgatacaaggatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaac |
706 |
Q |
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| T |
42453031 |
ggagcaaacgatacaaggatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaac |
42453130 |
T |
|
| Q |
707 |
cttctgggctgaagaagatgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtacaaaaagtacaca |
792 |
Q |
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| T |
42453131 |
cttctgggctgaagaagatgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtataaaaagtacaca |
42453216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 27253755 - 27253643
Alignment:
| Q |
430 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
529 |
Q |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| |||||||||| |||| ||||||||||||||| ||||| |
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| T |
27253755 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttggg |
27253656 |
T |
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| Q |
530 |
aggtctatgatcc |
542 |
Q |
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| T |
27253655 |
aagtttatgatcc |
27253643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 21197913 - 21197801
Alignment:
| Q |
430 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
529 |
Q |
| |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| ||| |||||| |||| ||||||||||||||| ||||| |
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| T |
21197913 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatattctttcaccaaggtggaatgagcaatatacttggg |
21197814 |
T |
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| Q |
530 |
aggtctatgatcc |
542 |
Q |
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| || |||||||| |
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| T |
21197813 |
aagtttatgatcc |
21197801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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