View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567-Insertion-6 (Length: 405)
Name: NF5567-Insertion-6
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 42017710 - 42017768
Alignment:
| Q |
7 |
aatgtgatcgtcgtataaaaccttgatcaacatcaaccaaaagccgtgtctattgaatg |
65 |
Q |
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| T |
42017710 |
aatgtgatcgtcgtataaaaccttgatcaacatcaaccgaaagccgtgtctattgaatg |
42017768 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 42018062 - 42018113
Alignment:
| Q |
354 |
ctctcaaacttccgatgatacaatgaacaaagtgttgctctctctgtctctg |
405 |
Q |
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| T |
42018062 |
ctctcaaacttccgatgatacaatgaacaaagtgttgctgtctctgtctctg |
42018113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 42017846 - 42017899
Alignment:
| Q |
153 |
tatccactattaaaagaaaataacaatgaaca-agcaagaacgatcataacatt |
205 |
Q |
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| T |
42017846 |
tatccactattaaaagaaaataacaatgaacatagcaagaatgatcataacatt |
42017899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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