View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567-Insertion-7 (Length: 370)
Name: NF5567-Insertion-7
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567-Insertion-7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 37111779 - 37111418
Alignment:
| Q |
9 |
acagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagccacactcttacacatggctgtcattatcttcatagttatcgccggtc |
108 |
Q |
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| T |
37111779 |
acagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagccacactcttacacatggctgtcattatcttcatagttatcgccggtc |
37111680 |
T |
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| Q |
109 |
taatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcacggtatggtcaatgcttcagctgtacttttctttgcttatgttggctt |
208 |
Q |
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| T |
37111679 |
taatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcacggtatggtcaatgcttccgctgtacttttctttgcttatgttggctt |
37111580 |
T |
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| Q |
209 |
tgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaacaataatctattgc |
308 |
Q |
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| T |
37111579 |
tgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaacaataatttattgc |
37111480 |
T |
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| Q |
309 |
ttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttgatgctccttt |
370 |
Q |
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| T |
37111479 |
ttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttgatgctccttt |
37111418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 37120034 - 37119673
Alignment:
| Q |
9 |
acagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagccacactcttacacatggctgtcattatcttcatagttatcgccggtc |
108 |
Q |
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| T |
37120034 |
acagctcttgcagtttacagcaccaaaggttcttccatcttcaactacatagccacaatgttccacatggctgtcattatcttcatagtaatcgccggtc |
37119935 |
T |
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| Q |
109 |
taatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcacggtatggtcaatgcttcagctgtacttttctttgcttatgttggctt |
208 |
Q |
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| T |
37119934 |
taatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggttgcatggaatggtcagttcttcggctgttcttttctttgcttatattggctt |
37119835 |
T |
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| Q |
209 |
tgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaacaataatctattgc |
308 |
Q |
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| T |
37119834 |
tgatgctgtttcaaccatggctgaagaaactaaaaaccctggtagagacattcctatcggtctagttggatcaatgacgattacaacagcaatatattgc |
37119735 |
T |
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| Q |
309 |
ttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttgatgctccttt |
370 |
Q |
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| T |
37119734 |
ttactaggagcaacactttgtcttatgcagaattacaaagaacttgatactgatgctccttt |
37119673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 347
Target Start/End: Original strand, 37136390 - 37136557
Alignment:
| Q |
180 |
gctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggtt |
279 |
Q |
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| T |
37136390 |
gctgttcttttctttgcttacataggctttgatgcagtgtcaactatggccgaggaaactaaaaaccctggcagagacattcctattggtcttgtaggat |
37136489 |
T |
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| Q |
280 |
caatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaa |
347 |
Q |
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| T |
37136490 |
caatggtaattatcactttcatatattgctcactagcaacaacactatgccttatgcagaactacaaa |
37136557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 10680912 - 10681013
Alignment:
| Q |
195 |
gcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaa |
294 |
Q |
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||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||| | ||| || || ||||||||| | || |||||||| |||||| |
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| T |
10680912 |
gcttatgttggattcgatgcagtttcgacaatggctgaggaaacgaagaatcctggaaaagatatccctattggtctaataggatcaatgacacttacaa |
10681011 |
T |
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| Q |
295 |
ca |
296 |
Q |
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|| |
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| T |
10681012 |
ca |
10681013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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