View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567-Insertion-8 (Length: 295)
Name: NF5567-Insertion-8
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 23623176 - 23623463
Alignment:
| Q |
8 |
gttcatactgaatgttgaaaagagcttcctctaactttattatttgatctaacattggagtaaaatgctctgcatagatgaaaatatcgacagcaacact |
107 |
Q |
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| T |
23623176 |
gttcatactgaatgttgaaaagagcttcctctaactttattatttgatctaacattggagtaaaatgctctgcatagatgaaaatatcaacagtaacact |
23623275 |
T |
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| Q |
108 |
caccattcgagaaggcttaacagttataaaatggacaagcataaactgaagtgtaagaaattaatcagttcaaacatgactcaccatcttgtgcatgttg |
207 |
Q |
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| T |
23623276 |
caccattccagaaggcttaacagtcataaaatggacaagcataaactgaagtgtaagaaattattcagttcaaacatgactcaccatcttgtgcatgttg |
23623375 |
T |
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| Q |
208 |
ttcaaaggttgaaaaatggttagaatgaacatcaaagtcgattttttcacgataaggtgacttgttagtgaagcagaagcgatatggt |
295 |
Q |
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| T |
23623376 |
ttcaaaggttgaaaaatggttagaatgaacatcaaagtcgattttttcacgataaggtgacttgttagtgaagcagaagcgatatggt |
23623463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 23618401 - 23618492
Alignment:
| Q |
161 |
taagaaattaatcagttcaaacatgactcaccatcttgtgcatgttgttcaaaggttgaaaaatggttagaatgaacatcaaagtcgatttt |
252 |
Q |
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| T |
23618401 |
taagaaattaatcagttcaaacatgactcatcatcttgtgcatgttgatcaaaggttgaaaaatggttagaatgaacatcaaagtcaatttt |
23618492 |
T |
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