View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5567_high_17 (Length: 211)
Name: NF5567_high_17
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 38532618 - 38532758
Alignment:
| Q |
57 |
tgaagaaccgttattattatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagcagctgcattgttcatagccacagcgat |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38532618 |
tgaagaaccgttattattatcctctccaacaaagaaaactattcataggattaacaacaattggattaatagtagctgcattgttcatagccacagcgat |
38532717 |
T |
|
| Q |
157 |
cacaaccttcggtacatcctcatcactacattgtccaatct |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38532718 |
cacaaccttcggtacatcctcatcactacattgtccaatct |
38532758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University