View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_high_7 (Length: 382)
Name: NF5567_high_7
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 49723736 - 49723379
Alignment:
| Q |
10 |
aatattttgaaggtaatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgaccttaagggagcgattgcatttgaac |
109 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49723736 |
aatattttgaaggtcatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgaccttaagggagcgattgcatttgaac |
49723637 |
T |
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| Q |
110 |
atagttatattaaatttgatgtagaaagaacccaaaggagtagtgcgaggaacaggataattgtgaaaggcttggcattttttggatagcaaatacttcc |
209 |
Q |
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| T |
49723636 |
atagttatattaaatttgatgtagaaagaacccaaaggagtagtgggaggaacaggataattgtgaaaggcttggcattttttggatagcaaatacttct |
49723537 |
T |
|
| Q |
210 |
gctgtgtttcatctgagaccgtgatgatattaccttccacgtatgtaactattaaagaatgttaggatggcatctttcttagttggatgcttttgggagc |
309 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||||||| |
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| T |
49723536 |
gctgtgtttcatctgagaccgtgatggtattaccttccacgtatgtaactattaaagactgtttggatggcatctttcctagttggatgctattgggagc |
49723437 |
T |
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| Q |
310 |
agatgta-nnnnnnngatcacaaccacttatggccagtatgccacagtgagggtattg |
366 |
Q |
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| T |
49723436 |
agatgtattttttttgatcacaaccacttatggccagtatgccacagtgagggtattg |
49723379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 49673831 - 49673475
Alignment:
| Q |
10 |
aatattttgaaggtaatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgaccttaagggagcgattgcatttgaac |
109 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673831 |
aatattttgaaggtcatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgaccttaagggagcgattgcatttgaac |
49673732 |
T |
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| Q |
110 |
atagttatattaaatttgatgtagaaagaacccaaaggagtagtgcgaggaacaggataattgtgaaaggcttggcattttttggatagcaaatacttcc |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673731 |
atagttatattaaatttgaggtagaaagaacccaaaggagtagtgggaggaacaggataattgtgaaaggcttggcattttttggatagcaaatacttcc |
49673632 |
T |
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| Q |
210 |
gctgtgtttcatctgagaccgtgatgatattaccttccacgtatgtaactattaaagaatgttaggatggcatctttcttagttggatgcttttgggagc |
309 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
49673631 |
gctgtgttttatctgagaccgtgatggtattaccttccacgtatgtaactattaaaggctgtttggatggcatctttcctagttggatgcttttgggagc |
49673532 |
T |
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| Q |
310 |
agatgtannnnnnngatcacaaccacttatggccagtatgccacagtgagggtattg |
366 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673531 |
agatgtattttttttatcacaaccacttatggccagtatgccacagtgagggtattg |
49673475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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