View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_high_8 (Length: 333)
Name: NF5567_high_8
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 127 - 323
Target Start/End: Original strand, 39396387 - 39396584
Alignment:
| Q |
127 |
tgcgcccacaaagatacaaagaaaacctctcatacatacacaataaacaccaaatgtgctgcacaaaaaaccacccattacacagcctacagtcagcaca |
226 |
Q |
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| T |
39396387 |
tgcgcccacaaagatacaaagaaaacccctcatacatacacaataaacaccaaatgtgctgcacaaaaaaccacccattacacagcctacagtcagcaca |
39396486 |
T |
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| Q |
227 |
ct-aaacctgccaacacatcacaacatccattacacagcctacaattagcaccaacagcaaagccacacagcttagccgaagctcctccacccctttg |
323 |
Q |
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| T |
39396487 |
ctcaaacctgccaacacatcacaacatccataacacagcctacaattagcaccaacagcaaagccacacagcttagccgaagctcctccacccctttg |
39396584 |
T |
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