View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5567_low_1 (Length: 661)

Name: NF5567_low_1
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5567_low_1
NF5567_low_1
[»] chr7 (5 HSPs)
chr7 (19-649)||(23995215-23995849)
chr7 (545-598)||(23998566-23998619)
chr7 (335-384)||(23998695-23998744)
chr7 (384-417)||(45050904-45050937)
chr7 (530-610)||(23989974-23990054)
[»] chr6 (4 HSPs)
chr6 (112-289)||(19743146-19743324)
chr6 (533-620)||(19743018-19743105)
chr6 (384-430)||(34988768-34988814)
chr6 (384-417)||(26128010-26128043)
[»] chr4 (5 HSPs)
chr4 (382-429)||(31609716-31609763)
chr4 (383-430)||(1058240-1058287)
chr4 (384-431)||(55318659-55318706)
chr4 (384-426)||(5656946-5656988)
chr4 (386-431)||(20633179-20633224)
[»] chr8 (1 HSPs)
chr8 (384-430)||(14939557-14939603)
[»] chr5 (2 HSPs)
chr5 (384-430)||(34030426-34030472)
chr5 (382-431)||(12630130-12630179)
[»] chr1 (2 HSPs)
chr1 (386-430)||(45287047-45287091)
chr1 (383-420)||(39345126-39345163)
[»] chr2 (1 HSPs)
chr2 (382-417)||(37525869-37525904)


Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 19 - 649
Target Start/End: Complemental strand, 23995849 - 23995215
Alignment:
Q  19 aaaacacacacaaaaattcctatcaagtaaacctgattgaactgcatctatnnnnnnncatcggttacaactacataaaaattttgaaatgcttatgctc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||| ||||||||||||||||||    
T  23995849 aaaacacacacaaaaattcctatcaagtaaacctgattgaactgcatctataaaaaaacatcagttacaactacataaaaaatttgaaatgcttatgctc 23995750  T
Q  119 tccaatcaatattaaaaagcagcataaaaagaaattcagagttaggtatgcttttttgtgttccgttgatcatcgtactaaatttaatcgcatcttactt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23995749 tccaatcaatattaaaaagcagcataaaaagaaattcagagttaggtatgcttttttgtgttccgttgatcatcgtactaaatttaatcgcatcttactt 23995650  T
Q  219 gcattttaaaacctattctgagtataaacgattctgagccaaatcattcgtcctatgaattatgctatgtgctattagtactgacgtagatcaaaccaga 318  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23995649 tcattttaaaacctattctgagtataaacgattctgagccaaatcattcgtcctatgaattatgctatgtgctattagtactgacgtagagcaaaccaga 23995550  T
Q  319 ttaccattattataacatgaaaatagagtagtatgcaaatgtctaaagttcaaatattaaaacaaactagtatttccacccgtgcaacgcatgggcgaac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23995549 ttaccattattataacatgaaaatagagtagtatgcaaatgtctaaagttcaaatattaaaac-aactagtatttccacccgtgcaacgcatgggcgaac 23995451  T
Q  419 aaatattttttgttcaaatttgctcaaattattagctttagcagatgcttctgatcaaattttatgaagtcctatgaagttctttcgaacaaatattaaa 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23995450 aaatattttttgttcaaatttgctcaaattattagctttagcagatgcttctgatcaaattttatgaagtcctatgaagttcttccgaacaaatattaaa 23995351  T
Q  519 acaaatgctttagcagattcatgcatctgatcaaatttgcttaaaccaatagttgatgac----atatggtgatcggttaacagattttcaaaacaacgt 614  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  23995350 acaaatgctttagcagattcatgcatctgatcaaattttcttaaaccaatagttgatgacatatatatggtgatcggttaacagattttcaaaacaacgt 23995251  T
Q  615 gtgatgataaacgaa-caggagttacatggtatatt 649  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23995250 gtgatgataaacgaatcaggagttacatggtatatt 23995215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 23998619 - 23998566
Alignment:
Q  545 ctgatcaaatttgcttaaaccaatagttgatgacatatggtgatcggttaacag 598  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  23998619 ctgatcaaatttgcttaaaccaatagttgatgacacatggtgatcagttaacag 23998566  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 23998744 - 23998695
Alignment:
Q  335 atgaaaatagagtagtatgcaaatgtctaaagttcaaatattaaaacaaa 384  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  23998744 atgaaaatagagtagtatgcaaaggtctaaagatcaaatattaaaacaaa 23998695  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 45050937 - 45050904
Alignment:
Q  384 actagtatttccacccgtgcaacgcatgggcgaa 417  Q
    |||||||||||||||| |||||||||||||||||    
T  45050937 actagtatttccacccatgcaacgcatgggcgaa 45050904  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 610
Target Start/End: Complemental strand, 23990054 - 23989974
Alignment:
Q  530 agcagattcatgcatctgatcaaatttgcttaaaccaatagttgatgacatatggtgatcggttaacagattttcaaaaca 610  Q
    |||| ||||||| | || ||||| ||||||||||||||||| |||||||| | ||||||  |||  |||| ||||||||||    
T  23990054 agcacattcatgtagctaatcaattttgcttaaaccaatagctgatgacacaaggtgattagtttgcagaatttcaaaaca 23989974  T

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Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 112 - 289
Target Start/End: Complemental strand, 19743324 - 19743146
Alignment:
Q  112 tatgctctccaatcaatattaaaaagcagcataaaaagaaattcagagttaggtatgcttttttgtgttccgttgatcatcgtactaaatttaatcgcat 211  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  19743324 tatgctctccaatcaatattaaaaatcagcataaaaagaaactcaaagttaggtatgcttttctgtgttctgttgatcattgtactaaatttgatcgcat 19743225  T
Q  212 cttac-ttgcattttaaaacctattctgagtataaacgattctgagccaaatcattcgtcctatgaattatgctatgtg 289  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||||||| | |||||||    
T  19743224 cttactttgcattttaaaacctattctgagtataaacgattttaagccaaatgattcatcctatgaattcttctatgtg 19743146  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 533 - 620
Target Start/End: Complemental strand, 19743105 - 19743018
Alignment:
Q  533 agattcatgcatctgatcaaatttgcttaaaccaatagttgatgacatatggtgatcggttaacagattttcaaaacaacgtgtgatg 620  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  19743105 agattcatgcagctgatcaaatttgcttaaacaaatagttgatgacacacggtgatcggttaacagattttcaaaacaatgtgtgatg 19743018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 34988814 - 34988768
Alignment:
Q  384 actagtatttccacccgtgcaacgcatgggcgaacaaatattttttg 430  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||    
T  34988814 actagtatttccatccgtgcaacgcacgggcgaaaaaatattttttg 34988768  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 26128043 - 26128010
Alignment:
Q  384 actagtatttccacccgtgcaacgcatgggcgaa 417  Q
    |||||||||||||||||||||||||| |||||||    
T  26128043 actagtatttccacccgtgcaacgcacgggcgaa 26128010  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 31609763 - 31609716
Alignment:
Q  382 aaactagtatttccacccgtgcaacgcatgggcgaacaaatatttttt 429  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  31609763 aaactagtatttccacccgtgcaacgcacgggcgaacaaatatttttt 31609716  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 383 - 430
Target Start/End: Original strand, 1058240 - 1058287
Alignment:
Q  383 aactagtatttccacccgtgcaacgcatgggcgaacaaatattttttg 430  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  1058240 aactagtatttccacccgtgcaacgcacgggcgaaaaaatattttttg 1058287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 55318659 - 55318706
Alignment:
Q  384 actagtatttccacccgtgcaacgcatgggcgaacaaatattttttgt 431  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||    
T  55318659 actagtatttccacccgtgcaacgcacgggcaaacaaagattttttgt 55318706  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 5656988 - 5656946
Alignment:
Q  384 actagtatttccacccgtgcaacgcatgggcgaacaaatattt 426  Q
    ||||||||||||||| |||||||||| |||| |||||||||||    
T  5656988 actagtatttccacctgtgcaacgcacgggcaaacaaatattt 5656946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 20633224 - 20633179
Alignment:
Q  386 tagtatttccacccgtgcaacgcatgggcgaacaaatattttttgt 431  Q
    ||||||||||| |||||||||| | ||||||||||| |||||||||    
T  20633224 tagtatttccatccgtgcaacgtacgggcgaacaaagattttttgt 20633179  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 14939603 - 14939557
Alignment:
Q  384 actagtatttccacccgtgcaacgcatgggcgaacaaatattttttg 430  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  14939603 actagtatttccacccgtgcaacgcacgggcgaaaaaatattttttg 14939557  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 34030472 - 34030426
Alignment:
Q  384 actagtatttccacccgtgcaacgcatgggcgaacaaatattttttg 430  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  34030472 actagtatttccacccgtgcaacgcacgggcgaaaaaatattttttg 34030426  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 12630130 - 12630179
Alignment:
Q  382 aaactagtatttccacccgtgcaacgcatgggcgaacaaatattttttgt 431  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  12630130 aaactagtatttctacccgtgcaacgcactggcgaacaaatattttttgt 12630179  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 45287047 - 45287091
Alignment:
Q  386 tagtatttccacccgtgcaacgcatgggcgaacaaatattttttg 430  Q
    ||||||||||| |||||||||||| || |||||||||||||||||    
T  45287047 tagtatttccatccgtgcaacgcacggacgaacaaatattttttg 45287091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 39345126 - 39345163
Alignment:
Q  383 aactagtatttccacccgtgcaacgcatgggcgaacaa 420  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  39345126 aactagtatttccacccgtgcaacgcacgggcaaacaa 39345163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 37525869 - 37525904
Alignment:
Q  382 aaactagtatttccacccgtgcaacgcatgggcgaa 417  Q
    |||||||||||||||||||||||||||| |||||||    
T  37525869 aaactagtatttccacccgtgcaacgcacgggcgaa 37525904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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