View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_low_10 (Length: 299)
Name: NF5567_low_10
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 64 - 287
Target Start/End: Original strand, 27216939 - 27217162
Alignment:
| Q |
64 |
acacttaa-atattaattgttgtaactgttaatcagacattgtaaaactgttttacgcatacattcaaccaaattataccacaaggccactttattatgt |
162 |
Q |
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| T |
27216939 |
acacttaagatattaattgttgtaactgttaatcagacattgtaaaactgttttacgcatacattcaaccaaattataccacaaggccactttattatgt |
27217038 |
T |
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| Q |
163 |
tcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatcgagtatgtacaaattaaatcctta |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27217039 |
tcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatcgagtatgtacaaattaaatcctta |
27217138 |
T |
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| Q |
263 |
cactaaattcaattcagtaaacctt |
287 |
Q |
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| T |
27217139 |
cactaaattcaattc-gtaaacctt |
27217162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 27219664 - 27219804
Alignment:
| Q |
139 |
taccacaaggccactttattatgttcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatc |
238 |
Q |
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|||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| | |
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| T |
27219664 |
taccacaaggccacattaatatgtacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatatttaatagagttttacactg-tt |
27219762 |
T |
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| Q |
239 |
gagtatgtacaaattaaatccttacactaaattcaattcagt |
280 |
Q |
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| T |
27219763 |
gagtatgtacaaattaaatccttacactaaattcaattcagt |
27219804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27216871 - 27216920
Alignment:
| Q |
18 |
atgtagactatgagaaaacacaacaaacaacaaacatgggttgcagacac |
67 |
Q |
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| T |
27216871 |
atgtagactatgagaaaacacaacaaacaacaaacatgggttgcagacac |
27216920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 27219471 - 27219529
Alignment:
| Q |
94 |
atcagacattgtaaaactgttttacgcatacattcaaccaaattataccacaaggccac |
152 |
Q |
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| T |
27219471 |
atcaggcaatgtaaaactgttttacgcatacattcaaccaaatcataccacaagtccac |
27219529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 24047796 - 24047839
Alignment:
| Q |
241 |
gtatgtacaaattaaatccttacactaaattcaattcagtaaac |
284 |
Q |
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| T |
24047796 |
gtatatacaaattaaatccttacactaaattcaattaagtaaac |
24047839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 34261848 - 34261781
Alignment:
| Q |
222 |
acagttttacactgatcgagtatgtacaaattaaat-ccttacactaaattcaattcagtaaaccttt |
288 |
Q |
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| T |
34261848 |
acagttatacactgattgagtatatacaaattaaatcccctacactaaattcaatcaagtaaaccttt |
34261781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 37580435 - 37580604
Alignment:
| Q |
119 |
gcatacattcaaccaaattataccacaaggccactttattatgttcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgta |
218 |
Q |
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|||||||||||| ||||| ||| ||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||| ||| || ||||| | |
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| T |
37580435 |
gcatacattcaatcaaatcataaggtaaggccactttattatgctcctttatatctctacaaatatttacacgatgagatatgatttgatatacatataa |
37580534 |
T |
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| Q |
219 |
aatacagttttacactgatcgagtatgtacaaattaaat-ccttacactaaattcaattcagtaaacctt |
287 |
Q |
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|| |||||||||||||||| |||||| |||||||||||| || ||||||||||||||| |||||||||| |
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| T |
37580535 |
aagacagttttacactgattgagtatatacaaattaaatcccctacactaaattcaatcgagtaaacctt |
37580604 |
T |
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