View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_low_12 (Length: 254)
Name: NF5567_low_12
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 43657646 - 43657399
Alignment:
| Q |
1 |
actttcgaatggaacacgatccaaacacatttcaagaatatcattgggaagaagaaaaatttcggactttacttcaacggatttctttgtgttttgttgt |
100 |
Q |
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| T |
43657646 |
actttcgcatgcaacacgatccaaacacatttcaagaataccatcgggaagaagaaagatttcggactttacttcaatggatttctctgtgttttgttgt |
43657547 |
T |
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| Q |
101 |
ctattccaaaacctctccttcaccccaaagccacatgagaagaagcgaccaacagaggtttcttctacttcatctttggggctacaaacaaaagcactt- |
199 |
Q |
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| T |
43657546 |
ctattccaaaacctctccttcaccccaaagccacatgagaagaagcgacctacagaggtttcttctacttcatctttggggctacaaacaaaagcacttg |
43657447 |
T |
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| Q |
200 |
cttcccaacttcttcccatctcttctgacgctttaactattcttctca |
247 |
Q |
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| T |
43657446 |
atgaccaacttcttcccatctcttctgacgctttaactattctactca |
43657399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 10367427 - 10367339
Alignment:
| Q |
4 |
ttcgaatggaacacgatccaaacacatttcaagaatatcattgggaagaagaaaaatttcggactttacttcaacggatttctttgtgt |
92 |
Q |
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| T |
10367427 |
ttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattcctttgtgt |
10367339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 10378955 - 10378878
Alignment:
| Q |
1 |
actttcgaatggaacacgatccaaacacatttcaagaatatcattgggaagaagaaaaatttcggactttacttcaac |
78 |
Q |
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| T |
10378955 |
actttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaac |
10378878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 10367314 - 10367262
Alignment:
| Q |
81 |
atttctttgtgttttgttgtctattccaaaacctctccttcaccccaaagcca |
133 |
Q |
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| T |
10367314 |
atttctttgggttgtgttgcctcttccaaaaccactccttcaccccgaagcca |
10367262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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