View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_low_15 (Length: 228)
Name: NF5567_low_15
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_low_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 22022876 - 22023052
Alignment:
| Q |
1 |
atcaatttcattcaaaattatgcgcattaccatgttcaatcctcaatatgtttggtactttatcttgtttatttactaaaataagataaattttgtctag |
100 |
Q |
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| T |
22022876 |
atcaatttcattcaaaattatgcgcattaccaagttcaatcctccatatgtttggtaccttatcttgtttatttactaaaataagataaattttgtctag |
22022975 |
T |
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| Q |
101 |
ataaacgacttgaattattaaagcaaaagacataaacggttgttcctctacttgcttccaagacccaggggatgggt |
177 |
Q |
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| T |
22022976 |
ataaacgacttgacttattaaagcaaaagacataaacggttgttcctctacttgcttccaagacccaagggatgggt |
22023052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 10008375 - 10008407
Alignment:
| Q |
196 |
actagatcgtctacccgtgctaacgcacgggtc |
228 |
Q |
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| T |
10008375 |
actagatcgtctacccgtgctaccgcacgggtc |
10008407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 7853728 - 7853696
Alignment:
| Q |
196 |
actagatcgtctacccgtgctaacgcacgggtc |
228 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
7853728 |
actagatcgtctacccgtgctaccgcacgggtc |
7853696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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