View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5567_low_2 (Length: 552)
Name: NF5567_low_2
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 547
Target Start/End: Complemental strand, 32405824 - 32405277
Alignment:
| Q |
16 |
catttacaattctccttggctttgaatgttctttgtatttgggttatgtgtatttgagagtgaacaaatggaccttttccatgtataattcatcataata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32405824 |
catttacaattctccttggctttgaatgttctttgtatttgggttatgtgtatttgagagtgaacaaatggaccttttccatgtataattcatcataata |
32405725 |
T |
|
| Q |
116 |
ataacattataataagatcttatgttatgttacatccaatcaattatgtgggcatgtcaaggttgaaaatgatgatttaatctaaattgaatccaacata |
215 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32405724 |
ataacatt---ataagatcttatgttatgttacatccaatcaattatgtgggcatgtcaaggttgaaaatgatgatttaatctaaattggatccaacata |
32405628 |
T |
|
| Q |
216 |
ctataca-tttcttttttcaacaaaaccaaactcaatgcatttcattcaaaataaatgtagaaatacatgttgggatgaaattaaaaatatggtgcctaa |
314 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32405627 |
ctatacatttttttttttcaacaaaaccaaactcaatgcatttcattcaaaataaatgtagaaatacatgttgggatgaaattaaaaatatggtgcctaa |
32405528 |
T |
|
| Q |
315 |
catgcaacattgac------------------gcgacatggtatgtttgtccatgaataaaacttattataaagtttggagagaaattcnnnnnnngatc |
396 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32405527 |
catgcaacattgacgccctggctaagttatgagcgacatggtatgtttgtccatgaataaaacttattataaagtttggagagaaattcaaaaaaagatc |
32405428 |
T |
|
| Q |
397 |
taaaatcatttaaaatgactctcaattcaatttggttcctagaattatcaaagataccatccattacttctttgcaatcgagttcaatggttatcttcga |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32405427 |
taaaatcatttaaaatgactctcaattcaatttggttcctagaattatcaaagataccatccactacttctttgcaatcgagttcaatggttatcttcga |
32405328 |
T |
|
| Q |
497 |
taatcccaactcatcaagccaggtgagtgctttctttacacctatgcttct |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32405327 |
taatcccaactcatcaagccaggtgagtgctttctttacacctaagcttct |
32405277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University