View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_low_3 (Length: 478)
Name: NF5567_low_3
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 34671044 - 34671495
Alignment:
| Q |
18 |
catatgagtacaaatgaaagaatatttattctaactctaccatcgtagttggtttgaataaagcaaattatannnnnnnattacataataccatatagca |
117 |
Q |
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| T |
34671044 |
catatgagtacaaatgaaagaatgtttattctaactctaccatcgtagttggtttgaataaagcaaattatatttttttattacagaataccatatagca |
34671143 |
T |
|
| Q |
118 |
atgtcttcnnnnnnnnataattaaattagcccaccgaaattaatatcggagacaaccaaatcagagactttaattaagaggaacccactcaaagaggaac |
217 |
Q |
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| T |
34671144 |
atgtctttttttttttaaaattaaattagcccatcaaaattaatatcggagacaatcaaatcagagactttaattaagaggaatccacttaaagaggaac |
34671243 |
T |
|
| Q |
218 |
ttactccaagatcttaaaccaacaccatcaaactaattcaaatggattatcataaagatacttaatagggaattttattcaaagacatctaatctctttt |
317 |
Q |
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| T |
34671244 |
ttactccaagatcttaaaccaacaccaccaaactaattcaaatggattatcataaagaaacttaatagggaattttattcaaagatatctaatctctttt |
34671343 |
T |
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| Q |
318 |
caaataaccctctaaagcaccaaaatgcgcgagatgcttgtaaagaaaactgcgacacactatttcaaatcctaaccaatttgctaccaaagatcataac |
417 |
Q |
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| T |
34671344 |
caaataaccctctagagcaccaaaatgcgcgagatgcttgtaaagaaaactgtgacacactatttcaaatcctaaccaatttgctaccaaagatcataac |
34671443 |
T |
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| Q |
418 |
ccgcc-nnnnnnnnttgcaactgacaattaagtgatctctatcttgattcat |
468 |
Q |
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| T |
34671444 |
ccgccaaaaaaaaattgcatccgacaattaagtgatatctatcttgattcat |
34671495 |
T |
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