View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_low_4 (Length: 439)
Name: NF5567_low_4
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 42017285 - 42017699
Alignment:
| Q |
1 |
caaagggggaaaacaatcttatcttagtgtctacaattggaacaaaggaaccaaggacgacacgaataagacacaattgacatgtagaagtaaaacatgt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42017285 |
caaagggggaaaacaatcttatcttagtgtttacaattggaacaaaggaaccaaggacgacacgaataagacacaattgacatgtagaagtaaaacatgt |
42017384 |
T |
|
| Q |
101 |
ttggattgacttttagaaatctcataatcagaaggaattaccatagcgagttttttgtcaaaaattgtttttatgtttaacttgcaaaaactagacatga |
200 |
Q |
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| T |
42017385 |
ttggattgacttttagaaatctcataatcagaaggaattaccatagcgagttttttgtcaaaaattgtttttatgtttaacttgcaaaaactagacatga |
42017484 |
T |
|
| Q |
201 |
gattatcaacaccaagttgtgaagtgattgtgtccgtgacatttaggttttcgatatttctgctagagttac--nnnnnnngaagattgtaaacacgatc |
298 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
42017485 |
gattatcaacaccaagttgtgaagcgattgtgtccgcgacatttaggtttttgatatttctgctagagttacaaaaaaaaagaagattgtaaacacgatc |
42017584 |
T |
|
| Q |
299 |
aggataactacatcgcaatcacgacctaggtcaagacatctagattttaatgtcgcatcatggatcgcaattgcagccacatcatacctaattgactgca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42017585 |
aggataactacatcgcaatcacgacctaggtcaagacatctagattttaatgtcgcatcatggatcgcaattgcagccacatcatacctaattgactgca |
42017684 |
T |
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| Q |
399 |
atttgctcggtataa |
413 |
Q |
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| T |
42017685 |
atttgctcggtataa |
42017699 |
T |
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