View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5567_low_6 (Length: 382)
Name: NF5567_low_6
Description: NF5567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5567_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 60 - 365
Target Start/End: Complemental strand, 39676936 - 39676631
Alignment:
| Q |
60 |
gatatatcgagttgcatacatcgttttcttcaacattgttagtaaaatgtcttatcatgtgacggtggatctatttatctagtaggtatagttttatgaa |
159 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676936 |
gatatatcgagttgcatacatcgttctcttcaacattgttagtaaaatgtcttatcatgtgacggtggatctatttatctagtaggtatagttttatgaa |
39676837 |
T |
|
| Q |
160 |
atggaaaggaacaactttgcatggagttacgagattattatttatagactaaaaagaaactaactacttggatggatgaaaaatgtcctaaaccacctaa |
259 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39676836 |
atggaaaggaacaactttacatggagttacgagattattatttatagactaaaaagaaactaactacttgaatggatgaaaaatgtcctaaaccacctaa |
39676737 |
T |
|
| Q |
260 |
aaacttcattgacaagttccctccaatcttttgaaatttgaaagttgataaaatctcaagtgtaaccactcatttgaacttcacttgcactctttatatg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676736 |
aaacttcattgacaagttccctccaatcttttgaaatttgaaagttgataaaatctcaagtgtaaccactcatttgaacttcacttgcactctttatatg |
39676637 |
T |
|
| Q |
360 |
gtagtt |
365 |
Q |
| |
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|||||| |
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| T |
39676636 |
gtagtt |
39676631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 365
Target Start/End: Complemental strand, 27889050 - 27888922
Alignment:
| Q |
234 |
gatgaaaaatgtcctaaaccacctaaaaacttcattgacaagttccctccaatcttttgaaatttgaaagttgataaaatctcaagtgtaaccactcatt |
333 |
Q |
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| T |
27889050 |
gatgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatcttgaatgttgataacttctcaaatgaaacca---att |
27888954 |
T |
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| Q |
334 |
tgaacttcacttgcactctttatatggtagtt |
365 |
Q |
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|||| ||| ||||||||||||| ||||||||| |
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| T |
27888953 |
tgaaattctcttgcactctttacatggtagtt |
27888922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 365
Target Start/End: Complemental strand, 27947708 - 27947580
Alignment:
| Q |
234 |
gatgaaaaatgtcctaaaccacctaaaaacttcattgacaagttccctccaatcttttgaaatttgaaagttgataaaatctcaagtgtaaccactcatt |
333 |
Q |
| |
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||||| || |||| ||||||||||||||||||| |||||||| ||| |||||||||||||| ||||| |||||||| |||||| || ||||| ||| |
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| T |
27947708 |
gatgacaagtgtcataaaccacctaaaaacttctttgacaagctccttccaatcttttgaatcttgaatgttgataacttctcaaatgaaacca---att |
27947612 |
T |
|
| Q |
334 |
tgaacttcacttgcactctttatatggtagtt |
365 |
Q |
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|||| ||| ||||||||||||| ||||||||| |
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|
| T |
27947611 |
tgaaattctcttgcactctttacatggtagtt |
27947580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 27865326 - 27865204
Alignment:
| Q |
234 |
gatgaaaaatgtcctaaaccacctaaaaacttcattgacaagttccctccaatcttttgaaatttgaaagttgataaaatctcaagtgtaaccactcatt |
333 |
Q |
| |
|
||||| || |||| ||||||||||||||||||| |||||||||| | ||| || ||||||| ||||| ||||||| ||| ||||| |||||| ||| |
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|
| T |
27865326 |
gatgacaattgtcataaaccacctaaaaacttctttgacaagtttcttccgatgttttgaatcttgaattttgataacttctaaagtgaaaccaccaatt |
27865227 |
T |
|
| Q |
334 |
tgaacttcacttgcactctttat |
356 |
Q |
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|||| || | |||||||||||| |
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| T |
27865226 |
tgaaatttccctgcactctttat |
27865204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 47790581 - 47790531
Alignment:
| Q |
176 |
ttgcatggagttacgagattattatttatagactaaaaagaaactaactact |
227 |
Q |
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||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
47790581 |
ttgcatggagttatgagattattatttatagact-aaaataaactaactact |
47790531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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