View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5568-Insertion-1 (Length: 1080)
Name: NF5568-Insertion-1
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 655; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 8 - 742
Target Start/End: Complemental strand, 17461886 - 17461155
Alignment:
| Q |
8 |
ttacaagtatccattttatggaatgcttgcatgagaaaagaaaatgagtaatatactaatatgcatttacaactccacctactcaaatttgtatacttaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17461886 |
ttacaagtatccattttatggaatgcttgcatgagaaaagaaaatgagtaatatactaatatgcatttacaactccacctactcaaatttgtatacttaa |
17461787 |
T |
|
| Q |
108 |
cactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacatggatattagttgagtaagtcaatcagatgtctcaagaacagcattgttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17461786 |
cactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacattgatattagttgagtaagtcaatcagatgtctcaagaacagcattgttga |
17461687 |
T |
|
| Q |
208 |
gctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctatttttctccttaacttccaacagaaaacttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17461686 |
gctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctatttttctccttaacttccaacagaaaacttc |
17461587 |
T |
|
| Q |
308 |
cttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagtgccatggttgcaatggt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17461586 |
cttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagtgccatggttgcaatggt |
17461487 |
T |
|
| Q |
408 |
aaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgctttcttagcnnnnnnn |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17461486 |
aaatatgctttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagcgccaccatacattgtttgctttcttagcttttttt |
17461387 |
T |
|
| Q |
508 |
gagagttccctgtaaaaggttgaaatcaacaatgtgaaaggaaagtgaaatttgatgttttaaccctcatcagaaattctactgaaatagtatagcatat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17461386 |
gagagttccctgtaaaaggttgaaatcaacaatgtgaaagaaaagtg-aatttgatgttttaaccctcatcagaaattctactgaaatag--tagcatat |
17461290 |
T |
|
| Q |
608 |
atgattttggattctcagaaagggataacatctataattaatctgtatgctttatttgctactattttaccattaatgctattgttgtaatgatattagt |
707 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
17461289 |
atgattatggactctcagaaagggataacatctataattaatcagtatgctttatttgctactattttaccattaatgctgttgtcgtaatgatattagt |
17461190 |
T |
|
| Q |
708 |
cttcaactagtttgtcaaagacatgtattaagata |
742 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17461189 |
attcaactagtttgtcaaagacatgtattaagata |
17461155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 292 - 556
Target Start/End: Original strand, 17455422 - 17455686
Alignment:
| Q |
292 |
tccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagtg |
391 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||| |||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
17455422 |
tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcagtg |
17455521 |
T |
|
| Q |
392 |
ccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgc |
491 |
Q |
| |
|
|||| ||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17455522 |
ccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgc |
17455621 |
T |
|
| Q |
492 |
tttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaacaatgtgaaaggaaagtgaa |
556 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| || | |||||||||| |||||||| |
|
|
| T |
17455622 |
tttcttagcttttcttgagagttccctgtaaaacattgaagtcgaaaatgtgaaagaaaagtgaa |
17455686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 868 - 1065
Target Start/End: Original strand, 17455853 - 17456051
Alignment:
| Q |
868 |
ctctctctcctattatgaactgaaaagcagggaatgaagcatgtgtgtagccattgattacctgtaggaagtcatgacttcaggatctcttaaa-gcctt |
966 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||| | || | |||||||||||||||| ||||||||| |||||||||||||||| ||| | |
|
|
| T |
17455853 |
ctctctctcctgttatgaactgaaaa--agggaatgaagtatgcgcgtggtcattgattacctgtag-aagtcatgatttcaggatctcttaaaagccgt |
17455949 |
T |
|
| Q |
967 |
tttcggcacata-cattgacac-gaggaggtatggaagctgccaca-aacgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttat |
1063 |
Q |
| |
|
| |||||||| | |||| ||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17455950 |
tgtcggcacaaaacattaacaatgaggaggtatagaagctgccacagaatgtaagctgctaagggtaccagaaacatccatgtccaaatataggatttat |
17456049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 17455098 - 17455169
Alignment:
| Q |
86 |
ctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
157 |
Q |
| |
|
|||||||||| ||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
17455098 |
ctactcaaatctgtattcttagcactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacat |
17455169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 783 - 838
Target Start/End: Original strand, 17455746 - 17455801
Alignment:
| Q |
783 |
ttatatacaagtcatttttacggtgagtataaagacggataatatagtacctatct |
838 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17455746 |
ttatatacaagtcatttttacggtgagtataaagacaaataatatagtacctatct |
17455801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 17455171 - 17455214
Alignment:
| Q |
190 |
caagaacagcattgttgagctctccatcacttgaccttggtcat |
233 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
17455171 |
caagaacagcattgttgaactctccatcacttgatcttggtcat |
17455214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 924 - 1077
Target Start/End: Original strand, 17805256 - 17805413
Alignment:
| Q |
924 |
attacctgtaggaagtcatgacttcaggatctcttaaag-cctttttcggcacat-acattgacac-gaggaggtatggaagctgccacaaac-gtaagc |
1019 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| || || ||||| | ||||||||| |||| |||| ||| ||||||||| |||| | |
|
|
| T |
17805256 |
attacctataggaagtcatgacttcgggatctcttaaaaaccgttgtcggcgtaagacattgacaatgaggtagtatagaacctgccacaaggtgtaaac |
17805355 |
T |
|
| Q |
1020 |
tgctaagggtaccagaaacatccatgtccaaatataggatttatcttcaacataaggc |
1077 |
Q |
| |
|
| ||||||| |||||||||| |||||| || | ||||||||||||||||| ||||||| |
|
|
| T |
17805356 |
tactaagggaaccagaaacagccatgtacatagataggatttatcttcaatataaggc |
17805413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 1e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 291 - 538
Target Start/End: Complemental strand, 52143036 - 52142789
Alignment:
| Q |
291 |
ttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagt |
390 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||| || ||||| ||||||||||| ||||||||| |||||| | |||||||||||||| |||| |
|
|
| T |
52143036 |
ttccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacagccagt |
52142937 |
T |
|
| Q |
391 |
gccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttg |
490 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||||| |||| |||||||| ||| |||| | |||||||| ||||||||||| |||||||| |
|
|
| T |
52142936 |
gccatggttgcaatggtaaatatgccttgtagaaaaatgtacattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattgtttg |
52142837 |
T |
|
| Q |
491 |
ctttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaaca |
538 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||| |||||| |
|
|
| T |
52142836 |
ctttcttagctttttttgagagttccctgtgaaagattgaagtcaaca |
52142789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 924 - 1077
Target Start/End: Complemental strand, 52142729 - 52142572
Alignment:
| Q |
924 |
attacctgtaggaagtcatgacttcaggatctcttaaa-gcctttttcggcacat-acattgacac-gaggaggtatggaagctgccaca-aacgtaagc |
1019 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||| ||||| | ||||||||| ||||| |||| ||| |||||||| || |||||| |
|
|
| T |
52142729 |
attacctgtaggatgtcatgacttcaggatctcttaaaagcctttgtcggcgtaagacattgacaatgaggaagtatagaacctgccacagaatgtaagc |
52142630 |
T |
|
| Q |
1020 |
tgctaagggtaccagaaacatccatgtccaaatataggatttatcttcaacataaggc |
1077 |
Q |
| |
|
| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52142629 |
tactaagggaaccagaaacagccatgtccaaagataggatttatcttcaacataaggc |
52142572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 52143129 - 52143069
Alignment:
| Q |
168 |
tgagtaagtcaatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttg |
228 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
52143129 |
tgagtaagtcaattagatctcccaagaacagcattgttgagctctccgttacttgaccttg |
52143069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 6e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 473 - 782
Target Start/End: Original strand, 774869 - 775177
Alignment:
| Q |
473 |
gccaccatacattgtttgctttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaacaatgtgaaaggaaagtgaa------------attt |
560 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
774869 |
gccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaactaattt |
774968 |
T |
|
| Q |
561 |
gatgttttaaccctcatcagaaattctactgaaatagtatagcatatatgattt--tggattctcagaaagggataacatctataattaatctgtatgct |
658 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||| |||||| |||| ||||||| |||||||||| |||| | |
|
|
| T |
774969 |
gatgttttaaccctcatcagaaattctattgaaatag--tagcagatatgattttatggactctcagggaggggtaacatcaataattaatcaatatgtt |
775066 |
T |
|
| Q |
659 |
ttatttgctactattttaccattaatgctattgttgtaatgatattagtcttcaactagtttgtcaaagacatgtattaagatagaccatattcaagtt- |
757 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||| | ||| ||||||||||||| || |||||| |||| |||||||||| ||||| |
|
|
| T |
775067 |
ttctttgctactattttaccat--------------taatgatattaatattctactagtttgtcaatgaaatgtatcaagacagaccatatttaagtta |
775152 |
T |
|
| Q |
758 |
acttaaatgagactaataagtttgg |
782 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
775153 |
actaaaatgagactaataagtttgg |
775177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 844 - 1040
Target Start/End: Original strand, 775279 - 775479
Alignment:
| Q |
844 |
tctcgactctatctattgtcgtccctctctctcctattatgaactgaaaagcagggaatgaagcatgtgtgtagccattgattacctgtaggaagtcatg |
943 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||| |||| |||||| ||| |||| || |||||||||| |||||||||||| |
|
|
| T |
775279 |
tctcgactctatctattgtcgtccctcttcctactattatgaactcaaaaaaagggaaggaaatatgtatgcgatagttgattacctataggaagtcatg |
775378 |
T |
|
| Q |
944 |
acttcaggatctctt-aaagcctttttcggcac-atacattgac-acgaggaggtatggaagctgccaca-aacgtaagctgctaagggtaccagaaaca |
1039 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| | ||||| || | |||||||||| |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
775379 |
acttcaggatctcttaaaagccgttttcggcacaagacattaacaatgaggaggtatagaagctgccacataatgtaagctgctaagggtaccagaaaca |
775478 |
T |
|
| Q |
1040 |
t |
1040 |
Q |
| |
|
| |
|
|
| T |
775479 |
t |
775479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 774804 - 774857
Alignment:
| Q |
8 |
ttacaagtatccattttatggaatgcttgcatgagaaaagaaaatgagtaatat |
61 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
774804 |
ttacaagtatccattttagggaatgcttgcatgaaaaaagaaaaagagtaatat |
774857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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