View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568-Insertion-2 (Length: 755)
Name: NF5568-Insertion-2
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Complemental strand, 42286113 - 42285661
Alignment:
| Q |
8 |
aaaagttcatgtgaagtttgagtctttatatattcaacttttctactcaaatagggtcatagcatcacaatcaatcaagccttttactcagaagccaaag |
107 |
Q |
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| T |
42286113 |
aaaagttcatgtgaagtttgagtctttatatattcaacttttctactcaaatagggtcatagcatcacaatcaatcaagccttttactcagaagccaaag |
42286014 |
T |
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| Q |
108 |
gaaactagatatgaaacggtaaggtttatatcaactttgctttttatgcctcaagaagttggtgtgagacttcaaagggaattgcaaaacaataggttga |
207 |
Q |
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| T |
42286013 |
gaaactagatatgaaacggtaaggtttatatcaactttgctttttatgcctcaagaagttggtgtgagacttcaaagggaattgcaaaacaataggttga |
42285914 |
T |
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| Q |
208 |
gttgctatgcaaagggaacatttaaggtgaaggttaatatgtggattttacattcatctttttggcttcatagtgtgtgccagattgagatgactggtcc |
307 |
Q |
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| T |
42285913 |
gttgctatgcaaagggaacatttaaggtgaaggttaatatgtggattttacattcatctttttggcttcatagtgtgtgccagattgagatgactggtcc |
42285814 |
T |
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| Q |
308 |
accaaatggttctcttgtagctagacaatgcataacaactcgatgaagagggagggtagattttatttttatgcttgtttaatgttttctagtttatata |
407 |
Q |
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| T |
42285813 |
accaaatggttctcttgtagctagacaatgcataacaactcgatgaagagggagggtagatttta------------tttaatgttttctagtttatata |
42285726 |
T |
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| Q |
408 |
ctattcgaatatatattgtatattaatcatgtcatatgtgcacaaagagtgatatgattcatctc |
472 |
Q |
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| T |
42285725 |
ctattcgaatatatattgtatattaatcatgtcatgtgtgcacaaagagtgatatgattcatctc |
42285661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 535 - 755
Target Start/End: Complemental strand, 42285598 - 42285378
Alignment:
| Q |
535 |
ctcaatcaattgttcataaaaatataagagtagggtgttcaagtccttcaatatcaagattgagcttatttttatctactaatattaatttaggaggaag |
634 |
Q |
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| T |
42285598 |
ctcaatcaattgttcataaaaatataagagtagggtgttcaagtccttcaatatcaagattgagcttatttttatctactaatattaatttaggaggaag |
42285499 |
T |
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| Q |
635 |
tttatttagatttatctgctgaggaaaatattttttatattagtgtttaggtattatttctaaaatattttatgaaattcacgtnnnnnnntaataaaca |
734 |
Q |
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| T |
42285498 |
tttatttagatttatctgctgaggaaaatattttttatattagtgtttaggtattatttctaaaatattttatgaaattcacgtaaaaaaataataaaca |
42285399 |
T |
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| Q |
735 |
aaagctggttctagggtgttc |
755 |
Q |
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| T |
42285398 |
aaagctggttctagggtgttc |
42285378 |
T |
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