View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568-Insertion-3 (Length: 625)
Name: NF5568-Insertion-3
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 7 - 625
Target Start/End: Original strand, 35294032 - 35294650
Alignment:
| Q |
7 |
actcccatgactcaatgcatacaacgccgccacacaattctcccttgtcgcctcggagtccagctcactccccctcaacaaactcaccaaacaatccact |
106 |
Q |
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| T |
35294032 |
actcccatgactcaatgcatacaacgccgccacacaattctcccttgtcgcctcggagtccagctcactccccctcaacaaactcaccaaacaatccact |
35294131 |
T |
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| Q |
107 |
gcattggcatccagcattgcagtccttccctccacacacattgccagattacacaaaatcaacaaaaccctactcgccattgtcccggtcatcaccatcg |
206 |
Q |
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| T |
35294132 |
gcattggcatccagcattgcagtccttccctccacacacattgccagattacacaaaatcaacaaaaccctactcgccattgtcccggtcatcaccatcg |
35294231 |
T |
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| Q |
207 |
aaagcaacgtcggaaccaccccaagtttaaccatcttaactctattactctgaaccagcgttaaatgatacagcgcaagcgctgaatcatgcctcgttcg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35294232 |
aaagcaacgtcggaaccaccccaagtttaaccatcttaactctattactctgaaccagcgttaaatgatacagcgcaagcgctgaatcatgcctcgttcg |
35294331 |
T |
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| Q |
307 |
ctcagactccgacctcagcgcgtgcatcaacggctgcaaagcaccaagaacaccaattgccatcttattatcatcatccaaagccaaactaaacaacgca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35294332 |
ctcagactccgacctcagcgcgtgcatcaacggctgcaaagcaccaagaacaccaattgccatcttattatcatcatccaaagccaaactaaacaacgca |
35294431 |
T |
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| Q |
407 |
cccgcagcatgttcctgcgattcactgaacccccctttcaacacatcaatcagaaaaggaacaaatcctgaccgcacaattctcatcttgttcgatttct |
506 |
Q |
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| T |
35294432 |
cccgcagcatgttcctgcgattcactgaacccccctttcaacacatcaatcagaaaaggaacaaatcctgaccgcacaattctcatcttgttcgatttct |
35294531 |
T |
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| Q |
507 |
ccaacgaaaggttgaccaacgaagcaacagcgttgacctgaacaacaacgtaacgcgaatcaatcaacgaacgaatcgccgataaaatccgcggcgtgca |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35294532 |
ccaacgaaaggttgaccaacgaagcaacagcgttgacctgaacaacaacgtaacgcgaatcaatcaacgaacgaatcgacgataaaatccgcggcgtgca |
35294631 |
T |
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| Q |
607 |
taacgaaaccctagcttct |
625 |
Q |
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| T |
35294632 |
taacgaaaccctagcttct |
35294650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 2222064 - 2222149
Alignment:
| Q |
346 |
agcaccaagaacaccaattgccatcttattatcatcatccaaagccaaactaaacaacgcacccgcagcatgttcctgcgattcac |
431 |
Q |
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|||||| | ||||||||| || | |||||||||||||| | || |||||||||| ||||| || |||||||||||||||||||| |
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| T |
2222064 |
agcacctaaaacaccaatcgcagttttattatcatcatcaagcgctaaactaaacatcgcacacgaagcatgttcctgcgattcac |
2222149 |
T |
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