View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568-Insertion-4 (Length: 597)
Name: NF5568-Insertion-4
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568-Insertion-4 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 223 - 597
Target Start/End: Complemental strand, 38792439 - 38792064
Alignment:
| Q |
223 |
gataactcttcacattattgcaggtttttggtt-gtaatacatctcatcatgagaacaagttcgcctcccacatgagggggcggcttaagaaaaattcaa |
321 |
Q |
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| T |
38792439 |
gataactcttcacattattgcagattttttgtttgcaacacatctcatcatgagaacaagttcgcctcccacatgagggggcggtttaagaaaaattcaa |
38792340 |
T |
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| Q |
322 |
tgattgaatttgatttatataatgaaattgatttgacatttaattatttgtccatataaattttgggtcatggtagtgctaaatactcttgcgatgatct |
421 |
Q |
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| T |
38792339 |
tgattgaatttgatttatataatgaaattgatttgacatttaattatttgtccatataaattttgggtcatgatagtgctaaatactcttgcgatgatct |
38792240 |
T |
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| Q |
422 |
tagattttcgacagtaaataataattcatttatttctacttttacttggagggttattgttagtgtttagaaggatgtttctagaaacataactaggtgt |
521 |
Q |
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| T |
38792239 |
tagattttcgacagtaaataataattcatctatttctacttttacttggagggttattgttagtgtttagaaggatgtctctagaaacataactaggtat |
38792140 |
T |
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| Q |
522 |
attaagaatggtcatcgtatttgattttgaaaatatgtttggatttgaaattatggccctttgcaaaatatcgcct |
597 |
Q |
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| T |
38792139 |
attaagaatggtcatcgtgtttggttttgaaaatatgtttggatttgagattatggccctttgcaaaatatcgcct |
38792064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 226 - 512
Target Start/End: Complemental strand, 38607641 - 38607351
Alignment:
| Q |
226 |
aactcttcacattattgcaggtttttggttgtaatacatctcat--catgagaacaagttcgcctcccacatgagggggc--ggcttaagaaaaattcaa |
321 |
Q |
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| T |
38607641 |
aactcttcacattattgcgggtttttggttgtaacacatctcatatcatgagaacaagttcgcctccctcatgagggggctaggcttaagaaaaattcaa |
38607542 |
T |
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| Q |
322 |
tgattgaatttgatttatataatgaaattgatttgacatttaattatttgtccatataaattttgggtcatggtagtgctaaatactcttgcgatgatct |
421 |
Q |
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| T |
38607541 |
tgattgaattcgatttatacgatgaaattaatttgacatttgattatttgtccatataaattttgggttatggtaatgcttaatactcttgcgataatct |
38607442 |
T |
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| Q |
422 |
tagattttcgacagtaaataataattcatttatttctacttttacttggagggttattgttagtgtttagaaggatgtttctagaaacata |
512 |
Q |
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| T |
38607441 |
tagatttccaacagtaaataataattcatctatttctacttctacttggagggttattgttagtgtttaggaggacgtctctagaaacata |
38607351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 38607873 - 38607744
Alignment:
| Q |
8 |
tgaagtacttatatacgcgcgcgcgggggagtgaaacggttagagagattttgtaatcgtgtgagtttgttacgcagttgttagaggtttaaagttttcg |
107 |
Q |
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| T |
38607873 |
tgaagtacttatatacgcgcgcgcgggggagtgaaactgttagagagattttgtaatcgtgtgagtttgttacgcggttgttagaggtttaaagttttcg |
38607774 |
T |
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| Q |
108 |
aatctttgggattcgtaagcgtgccaagta |
137 |
Q |
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| T |
38607773 |
aatctttgggatttgtaagcgtgccaagta |
38607744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 38792656 - 38792528
Alignment:
| Q |
8 |
tgaagtacttatatacgcgcgcgcgggggagtgaaacggttagagagattttgtaatcgtgtgagtttgttacgcagttgttagaggtttaaagttttcg |
107 |
Q |
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| T |
38792656 |
tgaagtacttatatacgcgcgcgcgggggagtgaaactgttagagagattttgtaatcgtgtgagtttgttacgcggttgttagaggtttaaagttttcg |
38792557 |
T |
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| Q |
108 |
aatctttgggattcgtaagcgtgccaagta |
137 |
Q |
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||| ||||||||| |||||||||||||||| |
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| T |
38792556 |
aat-tttgggatttgtaagcgtgccaagta |
38792528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 38122243 - 38122351
Alignment:
| Q |
8 |
tgaagtacttatatacgcgcgcgcgggggagtgaaacggttag-agaga-ttttgtaatcgtgtgagtttgttacgcagttgttagaggtttaaa-gttt |
104 |
Q |
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||||||| |||||||||||||||||||| | | |||||||||| ||||| | |||||| |||||||||||||||||| ||||||| || |||||| |||| |
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| T |
38122243 |
tgaagtatttatatacgcgcgcgcggggaaattaaacggttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttatagatttaaacgttt |
38122342 |
T |
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| Q |
105 |
tcgaatctt |
113 |
Q |
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| T |
38122343 |
ttgaatctt |
38122351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 38607257 - 38607185
Alignment:
| Q |
8 |
tgaagtacttatatacgcgcgcgcgggggagtgaaacggttagagagattttgtaatcgtgtgagtttgttac |
80 |
Q |
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| T |
38607257 |
tgaagtacttatatacgcgcgcgcaagagagtgaaatggttagagaaatattgtaagcgtgtgagtttgttac |
38607185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 38606558 - 38606491
Alignment:
| Q |
380 |
aattttgggtcatggtagtgctaaatactcttgcgatgatcttagattttcgacagtaaataataatt |
447 |
Q |
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| T |
38606558 |
aattttgggtcaaggtcgtgctaaatacttttgtgatgatcttagaatttcaacggtaaataataatt |
38606491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 28731809 - 28731892
Alignment:
| Q |
8 |
tgaagtacttatatacgcgcgcgcgggggagtgaaacggttag-agaga-ttttgtaatcgtgtgagtttgttacgcagttgtt |
89 |
Q |
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||||||| |||||||||||||||||||| | |||||||||||| ||||| | |||||| ||||| |||||||||||| |||||| |
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| T |
28731809 |
tgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgttagtttgttacgcggttgtt |
28731892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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