View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568-Insertion-5 (Length: 583)
Name: NF5568-Insertion-5
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 187 - 378
Target Start/End: Complemental strand, 5571074 - 5570886
Alignment:
| Q |
187 |
tttcatgtttcatcacaaatatattttggacaaaaatcaaaatgtcgcaatttatgtcttgatcaaatttcgttaccttattctttgtagtctctttttc |
286 |
Q |
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| T |
5571074 |
tttcatgtttcatcacaaatat--tttggacaaaaatcaaaatgtcacaatttatgtcttgatcaaatttcgttaccttattatttgtagtctctttttc |
5570977 |
T |
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| Q |
287 |
agcttctgaatgatcccttggttc-ggagcaatatattcagactgcgaaattcaaattcataagattgttatataatcccgtttctacattaa |
378 |
Q |
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| T |
5570976 |
atcttctgaatgatcccttggttcatgagcaatatattc--aatgcgaaattcaaattcataagattgttatataatcctgtttccacattaa |
5570886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 187 - 378
Target Start/End: Original strand, 33172081 - 33172271
Alignment:
| Q |
187 |
tttcatgtttcatcacaaatatattttggacaaaaatcaaaatgtcgcaatttatgtcttgatcaaatttcgttaccttattctttgtagtctctttttc |
286 |
Q |
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|||||||||| |||||||| || |||||||||||||||||||||| ||||||||| ||||||||||| || |||||||||| |||||| |||||| ||| |
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| T |
33172081 |
tttcatgttttatcacaaagat--tttggacaaaaatcaaaatgtcacaatttatgccttgatcaaatatcattaccttattatttgtaatctcttgttc |
33172178 |
T |
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| Q |
287 |
agcttctgaatgatcccttggttc-ggagcaatatattcagactgcgaaattcaaattcataagattgttatataatcccgtttctacattaa |
378 |
Q |
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| T |
33172179 |
agcttctgaatgctcccttggttcatgtggaatatattcagactgcaaaattcaaattcataagattgttatataatctagtttccacattaa |
33172271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 5571254 - 5571163
Alignment:
| Q |
7 |
aagcattttatttaatcttcgtttcatcaaagctgttatgggagctacacgaattgcaggtaggatgatttaagacacaaggaaaataagct |
98 |
Q |
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| T |
5571254 |
aagcattttatttaatcttcgtttcatcaaagctgttatgggagctacacgaattgcaggtaggatgatttaagacacaaagaaaataagct |
5571163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 442 - 575
Target Start/End: Original strand, 43637688 - 43637821
Alignment:
| Q |
442 |
atgttgaatttctcttgtttggtttgaatagaaataggggagagagagatataaagcgtgggacccacacactttattcttctccccaaagatgcgaaga |
541 |
Q |
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| T |
43637688 |
atgttgaatttttcttgtttggtttgattagaaataggggagagagagatatagagcatgggacccacacactttattcttctccccaaaaatgcgaaga |
43637787 |
T |
|
| Q |
542 |
aagagctaagaaaggctgcactttttcttatttc |
575 |
Q |
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| T |
43637788 |
aagagctgagaaaggctgcattttttcttatttc |
43637821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 33484265 - 33484301
Alignment:
| Q |
442 |
atgttgaatttctcttgtttggtttgaatagaaatag |
478 |
Q |
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| T |
33484265 |
atgttgaatttctcttgtttggtttgaattgaaatag |
33484301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 50345106 - 50345074
Alignment:
| Q |
11 |
attttatttaatcttcgtttcatcaaagctgtt |
43 |
Q |
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| T |
50345106 |
attttatttaatcttcgttttatcaaagctgtt |
50345074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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