View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568-Insertion-6 (Length: 580)
Name: NF5568-Insertion-6
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568-Insertion-6 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 14772912 - 14773487
Alignment:
| Q |
8 |
caattgaacatatataagacaaaacacgaacctatattaaaatgcgcatgaaggtgaacgtgttgtaataagtgtgaaatttgtctaatatataaagctt |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14772912 |
caattgaacatatataagacagaacacgaacctatattaaaatgcgcatgaaggtgaacgtgttgtaataagtgtgaaagttgtctaatatataaagctt |
14773011 |
T |
|
| Q |
108 |
a---cagcaatcaaagtttacaccattgtagagagcgcttgagctcatcacttttcatcaaataatataccgtttcttgtctttattttataggttctat |
204 |
Q |
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| T |
14773012 |
ataacagcaatcaaagttgacaccattgtagagagcgcttgagctcatcacttttcgtcaaataatataccgtttcttgtctttattttataggttctat |
14773111 |
T |
|
| Q |
205 |
cataccacataaaatatctatttatctaacccatcaaacaatgaagtacatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773112 |
cataccacataaaatatctatttatctaacccatcaaacaatgaagtacatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataa |
14773211 |
T |
|
| Q |
305 |
tgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773212 |
tgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttc |
14773311 |
T |
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| Q |
405 |
tccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagctctatgcaacca |
504 |
Q |
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| T |
14773312 |
tccatgacgagcaatttttaacaagagttcagatgatgccttccttgaagtctcatcagacctaaaattaatatttagtcagctgagctctatgcaacca |
14773411 |
T |
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| Q |
505 |
ataattttggtcatctgagctctagacaccgagggagtaatttaaaataattaggttgaaaaatcaacccataatc |
580 |
Q |
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| T |
14773412 |
ataattttagtcagctgagctctagacaccgagggagtaatttaaaataattaggttgaaaaatcaacccataatc |
14773487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 216 - 492
Target Start/End: Original strand, 15014527 - 15014800
Alignment:
| Q |
216 |
aaatatctatttatctaacccatcaaacaatgaagtacatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatgaaaaatacc |
315 |
Q |
| |
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|||||||||||||||||||||||| | || | | ||||| |||||||||||| |||||| |||||||| || || || |||||||||||||||||||| |
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| T |
15014527 |
aaatatctatttatctaacccatccagcagttatgtacagcaatatgcatgttcaattatgtatatgatcattcaaatgaataaaataatgaaaaatacc |
15014626 |
T |
|
| Q |
316 |
atagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgag |
415 |
Q |
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||||||| |||||| |||||||||||||||||||| |||||||| ||| || ||||| |||||||||| |||||||| || |||||||||||||||| || |
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| T |
15014627 |
atagttgtctcttgtatagccattgtaaatgaatcctgatcatcattaactgcaactgtaagacagggcacctgaaagccggtgtcttctccatgaccag |
15014726 |
T |
|
| Q |
416 |
caatttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagc |
492 |
Q |
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| T |
15014727 |
caatttttgacaagagttcagatgatgtcttccatgaaga---atcagacctaaaattaatatttagtcagctgagc |
15014800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 208 - 492
Target Start/End: Original strand, 15047280 - 15047564
Alignment:
| Q |
208 |
accacataaaatatctatttatctaacccatcaaacaatgaagtacatcaatatgcatgtacaattacgtatatgacaatgcagatagataaaataatga |
307 |
Q |
| |
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||||||| | |||||||||||||||| ||||| |||||| | || ||||||||||||||| ||||| | |||||| ||||| | |||| ||||| |
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| T |
15047280 |
accacattagatatctatttatctaatccatccaacaattatttatatcaatatgcatgtagaattatgaatatgaacatgcaaaggaataagtgaatga |
15047379 |
T |
|
| Q |
308 |
aaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctcc |
407 |
Q |
| |
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||||||| ||||| | |||| ||| |||||||||||||||||| ||||||||||||| | || |||||||| || |||||||| ||||| ||||| || |
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| T |
15047380 |
aaaatactgtagtttcttcttctataaccattgtaaatgaatctttatcatctttagctgctaccataagacaaggcacctgaaagccagtatcttcccc |
15047479 |
T |
|
| Q |
408 |
atgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagc |
492 |
Q |
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|| | | | |||||||||||||| ||| | |||||||||| ||||||||| |||||||| | || |||| |||||||| ||||| |
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| T |
15047480 |
gtgtctaacgatttttaacaagagctcatacgatgccttccatgaagactcgtcagacctgagatgaataattagtcagttgagc |
15047564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 495
Target Start/End: Original strand, 17879644 - 17879839
Alignment:
| Q |
302 |
taatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtc |
401 |
Q |
| |
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|||||||||||||| ||| | ||| | ||| |||||||||||||||| | ||||||||||||| | || |||||||| || | || ||| ||||| | |
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| T |
17879644 |
taatgaaaaataccccagtcgtttctcgtatacccattgtaaatgaatccttatcatctttagctgccaccataagacaaggcatctcaaagccagtata |
17879743 |
T |
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| Q |
402 |
ttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacc--taaaattaatatttagtcagctgagctct |
495 |
Q |
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|||||| ||||||||||| |||||||||| ||| || | || ||||||||||||||||| ||| || ||||| ||||||||| |||||| |
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| T |
17879744 |
agttccatgctcagcaatttttaccaagagttcatatgcagcatcccatgaagactcatcagacctataagatgaatatctagtcagctaagctct |
17879839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 486
Target Start/End: Original strand, 51365480 - 51365658
Alignment:
| Q |
308 |
aaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctcc |
407 |
Q |
| |
|
|||||||| |||||| |||||| | |||||||| |||||||| || |||||||||||| |||||||||| ||||| |||| ||| ||||| | |||||| |
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| T |
51365480 |
aaaataccctagttgactcttgtacagccattggaaatgaatactggtcatctttagctgcaactataaggcagggcaccttaaagccagtatgttctcc |
51365579 |
T |
|
| Q |
408 |
atgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcag |
486 |
Q |
| |
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|||||||||||||| || | ||||| | | |||||||||| ||| ||||||| ||||||||||| ||||||||||||| |
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| T |
51365580 |
atgacgagcaatttctacaaggagtttagacgatgccttccatgaggactcattagacctaaaatgaatatttagtcag |
51365658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 304 - 442
Target Start/End: Complemental strand, 53869070 - 53868932
Alignment:
| Q |
304 |
atgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtctt |
403 |
Q |
| |
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|||||||||||| ||||| |||||| ||||||||| ||||||||| || |||||||||||| |||||||||| || || |||| ||| ||| | |||| |
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| T |
53869070 |
atgaaaaataccctagttaactcttgtgtagccattggaaatgaatcctgttcatctttagctgcaactataaggcaaggcacctcaaagccattatctt |
53868971 |
T |
|
| Q |
404 |
ctccatgacgagcaatttttaacaagagttcaaatgatg |
442 |
Q |
| |
|
|||| ||||||||||||| || | ||||||| |||||| |
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| T |
53868970 |
ctccgtgacgagcaatttctacaaggagttcagatgatg |
53868932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 483
Target Start/End: Original strand, 54158187 - 54158368
Alignment:
| Q |
302 |
taatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtc |
401 |
Q |
| |
|
||||||||| |||| |||| | |||||| |||||||||||||||| | || ||||||||||| |||||||||| || || |||| ||| |||| || |
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| T |
54158187 |
taatgaaaattaccctagtagactcttgtgcagccattgtaaatgaaacctggtcatctttagcagcaactataaggcaaggcacctcaaagccagaatc |
54158286 |
T |
|
| Q |
402 |
ttctccatgacgagcaatttttaacaag-agttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagt |
483 |
Q |
| |
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|||||||||| |||||| | | ||||| |||| | |||||||| ||| ||| ||||||||||||||| ||| |||||||||| |
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| T |
54158287 |
ttctccatgagcagcaatatct-acaagaagtttagatgatgccctccatgaggactcatcagacctacaataaatatttagt |
54158368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 268 - 502
Target Start/End: Complemental strand, 36877393 - 36877159
Alignment:
| Q |
268 |
acaattacgtatatgacaatgcagatagataaaataatgaaaaataccatagttgcctcttggatagccattgtaaatgaatcttgatcatctttagcta |
367 |
Q |
| |
|
||||||| |||||||| ||||| || |||| ||| |||||||||| |||||| |||||| ||||||| || ||||| ||| ||||||| |||||| |
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| T |
36877393 |
acaattatgtatatgatcatgcaaattaataagttaacgaaaaataccctagttgactcttgtatagccaatgcaaatggatccagatcatccttagctg |
36877294 |
T |
|
| Q |
368 |
caactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttcaaatgatgccttccttgaagactcatcagacct |
467 |
Q |
| |
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|||||||||||||||| |||| | | ||||| | ||||||||||| |||||| | || |||||| ||| ||||| | ||| |||||||||||||||||| |
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| T |
36877293 |
caactataagacagggcacctcatagccagtattttctccatgaccagcaatctgtaccaagagatcatatgatactctccatgaagactcatcagacct |
36877194 |
T |
|
| Q |
468 |
aaaattaatatttagtcagctgagctctatgcaac |
502 |
Q |
| |
|
||||| ||| |||| |||||| |||| ||| |||| |
|
|
| T |
36877193 |
aaaataaatttttaatcagctaagctttatacaac |
36877159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 30782423 - 30782364
Alignment:
| Q |
136 |
agagcgcttgagctcatcacttttcatcaaataatataccgtttc-ttgtctttatttta |
194 |
Q |
| |
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||||| |||||||| ||| ||||| |||||||||||||||||||| ||| |||||||||| |
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| T |
30782423 |
agagctcttgagcttatctctttttatcaaataatataccgtttctttgcctttatttta |
30782364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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