View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568_high_2 (Length: 421)
Name: NF5568_high_2
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 13944112 - 13944506
Alignment:
| Q |
18 |
agtacagtctgttatcttccactattctccattgaagtccatttgtcacaccccactacccataccttcctctcccacataccccaaaatctcttagccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13944112 |
agtacagtctgttatcttccactattctccattgaagtccatttgtcacaccccactacccataccttcctctcccacataccccaaaatatcttagccc |
13944211 |
T |
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| Q |
118 |
aaaatatttgagaggagtaaatatgcatattttgtcctcatattgtgtaagctagtgtcaatataatccctaaataggctttgaatgtgtcaaaactcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13944212 |
aaaatatttgagaggagtaaatatgcatattttgtcctcatattgtgtgagctagtgtcaatataatccctaaataggctttgaatgtatcaaaactcaa |
13944311 |
T |
|
| Q |
218 |
caatgtccttgagttaatcttctcttagtaattttgttgtgaattaagatnnnnnnnttcacaccgatattttgatgtgtgaagcaaagggtcagtggt- |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13944312 |
caatgtccttgagttaatcttctcttagtaattttgttgtgaattaagataaaaaaattcacaccgatattttgatgtgtgaagcaaagggtccgtggta |
13944411 |
T |
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| Q |
317 |
attaataatcaaaacgattgtaagcgataacgacagattcaacaacaatatacaataaaaccacaattgaatcgaaggaggacatgatagaataa |
411 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13944412 |
attaataatcaaaacaattgtaagcgataacgacagattcaacaacaatatacaataaaaccacaattgaatcgaaggaggacatgataaaataa |
13944506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 4042933 - 4042542
Alignment:
| Q |
18 |
agtacagtctgttatcttccactattctccattgaagtccatttgtcacaccccactacccataccttcctctcccacataccccaaaatctcttagccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
4042933 |
agtacagtctgttatcttccactattctccattgaagtccatttgtcacattccactacccat-ccttcctctcccacataccccaaaatatcttagccc |
4042835 |
T |
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| Q |
118 |
aaaatatttgagaggagtaaatatgcatattttgtcctcatattgtgtaagctagtgtcaatataatccctaaataggctttgaatgtgtcaaaactcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4042834 |
aaaatatttgagaggagtaaatatgcatattttgtcctcatattgtgtgagctagtgtcaatataatccctaaataggctttgaatgtgtcaaaactcaa |
4042735 |
T |
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| Q |
218 |
caatgtccttgagttaatcttctcttagtaattttgttgtgaattaagatnnnnnnnttcacaccgatattttgatgtgtgaagcaaagggtcagtggt- |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||| |
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| T |
4042734 |
caatgtccttgagttaatcttctcttcgtaattttgttgtgaattaagat-aaaaaattcacaccgatattttgatgtgtgaagc-atgggtcagcggta |
4042637 |
T |
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| Q |
317 |
attaataatcaaaacgattgtaagcgataacgacagattcaacaacaatatacaataaaaccacaattgaatcgaaggaggacatgatagaataa |
411 |
Q |
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|||||||| |||||| || | || ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |
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| T |
4042636 |
attaataaccaaaacaatcgcaaacgataacaacagattcaacaacaatatacagcaaaaccacaattgaatcgaaggaggatatgataaaataa |
4042542 |
T |
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