View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568_high_4 (Length: 321)
Name: NF5568_high_4
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 48958317 - 48958467
Alignment:
| Q |
152 |
cagaagaaaaacaattattaacactgtccatataannnnnnnnaaagaactgtccatatgtacccaatagaaaaaacattatccatgtaaaagtacgtaa |
251 |
Q |
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| T |
48958317 |
cagaagaaaaacaattattaacactgtccatataattttttttaaagaactgtccatattgacccaatagaaaaaacattatccatgtaaaagtacgtaa |
48958416 |
T |
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| Q |
252 |
atgtacttaatttaagtaaaattattgaaggttttgtggcaatattacgat |
302 |
Q |
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| T |
48958417 |
atgtacttaatttaagtaaaattattgaaggttttgtggtaatattacgat |
48958467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48958167 - 48958254
Alignment:
| Q |
1 |
gagacattacgttttacatgtaagagttggttttgaacttctcacttggtcacctcaaaatggtggattttaattattaaactatttg |
88 |
Q |
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| T |
48958167 |
gagacattacgttttacatgtaagagttggtttcgaacttctcacttggtcacctcaaaatggtggattttaattattaaactatttg |
48958254 |
T |
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