View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568_high_7 (Length: 239)
Name: NF5568_high_7
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568_high_7 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 2660164 - 2660376
Alignment:
| Q |
10 |
tatctatgatgcatgtgagaaattagtggagattatataaatgatgacaatgatagagagtatactttattagttagcattacaagacttctttttatat |
109 |
Q |
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| T |
2660164 |
tatctatgatgcatgtgagaaattagtggagattatataaatgatgacaatgaaagagagtatactttattagttagcattacaagacttctttttatat |
2660263 |
T |
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| Q |
110 |
ggagacaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaacttaacttttgttgatccatttgtctcttataaaaaat |
209 |
Q |
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| T |
2660264 |
ggagacaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaacttaacttttgttgatccatttgtctcttataaaaaat |
2660363 |
T |
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| Q |
210 |
gacattttgtcga |
222 |
Q |
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| T |
2660364 |
gacattttgtcga |
2660376 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 30443834 - 30443742
Alignment:
| Q |
111 |
gagacaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaacttaacttttgttgatccatttgtctcttataaaaaa |
208 |
Q |
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| T |
30443834 |
gagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacat-----taacttttgttgacccatttgtttcttataaaaaa |
30443742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 46169951 - 46169915
Alignment:
| Q |
135 |
aatatatttgatttataatgtagactaaatacatcaa |
171 |
Q |
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| T |
46169951 |
aatatatctgatttataatatagactaaatacatcaa |
46169915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 37930 - 37985
Alignment:
| Q |
116 |
aaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaa |
171 |
Q |
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| T |
37930 |
aaattagtcaacaaaagttaatgtatttggtttaaaatttataccaaatacatcaa |
37985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 21485038 - 21484981
Alignment:
| Q |
114 |
acaaattagtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaa |
171 |
Q |
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| T |
21485038 |
acaaattggtcaaccaaaattgatgtatttggttcataatgtagactaaatacatcaa |
21484981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 12276845 - 12276898
Alignment:
| Q |
122 |
gtcaacaaaagttaatatatttgatttataatgtagactaaatacatcaactta |
175 |
Q |
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| T |
12276845 |
gtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaactta |
12276898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 18096972 - 18096940
Alignment:
| Q |
175 |
aacttttgttgatccatttgtctcttataaaaa |
207 |
Q |
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| T |
18096972 |
aacttttgttgacccatttgtctcttataaaaa |
18096940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 6282583 - 6282623
Alignment:
| Q |
111 |
gagacaaattagtcaacaaaagttaatatatttgatttata |
151 |
Q |
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| T |
6282583 |
gagacaaatgagtcaacaaaaattaatatatttggtttata |
6282623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 48377877 - 48377845
Alignment:
| Q |
139 |
tatttgatttataatgtagactaaatacatcaa |
171 |
Q |
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| T |
48377877 |
tatttgatttataatatagactaaatacatcaa |
48377845 |
T |
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