View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5568_high_8 (Length: 225)
Name: NF5568_high_8
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568_high_8 |
 | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 5572465 - 5572347
Alignment:
| Q |
89 |
agaaacccaatgttgtaattttatcttaaacatagtttattgaattc---aaacatttaaagggacatagtccatcaattaacatgtcctagaccatata |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5572465 |
agaaacccaatgttgtaattttatcttaaacatagtttattgaattctctaaatatttaaagggacatagtccatcaattaacatgtcctagaccatata |
5572366 |
T |
|
| Q |
186 |
taaatacataaataacccc |
204 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5572365 |
taaatacataaataacccc |
5572347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 343 - 463
Alignment:
| Q |
85 |
attaagaaacccaatgttgtaattttatcttaaacatag--tttattgaattc---aaacatttaaagggacatagtccatcaattaacatgtcctagac |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
343 |
attaagaaacccaatgttgtaattttatcttaaacatagaatttattaaattatttaaacatttaaagggacatgatccatcaattaacatgtcctagac |
442 |
T |
|
| Q |
180 |
catatataaatacataaataacccc |
204 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
443 |
c----ataaatacataaataacccc |
463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 540412 - 540466
Alignment:
| Q |
1 |
ctgcatctactattggctataacaggtcatattagaaggaccacagctggacctt |
55 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
540412 |
ctgcatctactactagctataacaggtcatattagaaggaccacagctggacctt |
540466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28823968 - 28824022
Alignment:
| Q |
1 |
ctgcatctactattggctataacaggtcatattagaaggaccacagctggacctt |
55 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28823968 |
ctgcatctaccacgggctataacaggtcatattagaaggaccacagttggacctt |
28824022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30562336 - 30562390
Alignment:
| Q |
1 |
ctgcatctactattggctataacaggtcatattagaaggaccacagctggacctt |
55 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
30562336 |
ctgcatctaccacgggctatatcaggtcatattagaaggaccacagttggacctt |
30562390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 54902129 - 54902183
Alignment:
| Q |
1 |
ctgcatctactattggctataacaggtcatattagaaggaccacagctggacctt |
55 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
54902129 |
ctgcatctaccacgggctatatcaggtcatattagaaggaccacagttggacctt |
54902183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University