View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5568_low_1 (Length: 529)
Name: NF5568_low_1
Description: NF5568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5568_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 15 - 514
Target Start/End: Complemental strand, 42479563 - 42479064
Alignment:
| Q |
15 |
tcataattaacagtggtccattctttttccccaggataacatgtgcttatagctacaagactagaaccaacacgtctgaaaattaatataacacaaccag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42479563 |
tcataattaacagtggtccattctttttccccaggataacacgtgcttatagctacaagactagaaccaacacgtctgaaaattaatataacacatccag |
42479464 |
T |
|
| Q |
115 |
ttgatgttggagcacatgagaaggcagcaatttgatatgtcctgtcaaagtttggcagcgtgatcagatccctagtaaagggattaaagagagagaaaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42479463 |
ttgatgttggagcacatgagaaggcagcaatttgatatgtcctgtcaaattttggcagcgtgatcagatccctagtaaagggattaaagagagagaaaat |
42479364 |
T |
|
| Q |
215 |
gtgatttccgtccaacctccgccagtcctgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccgtccaactctggcaactcaagg |
314 |
Q |
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| T |
42479363 |
gtgatttccgtccaacctccgccagtcctgccggtttagcaataaccaaccatcttttgtatagcaaacacgacatccatccaactctggcaactcaagg |
42479264 |
T |
|
| Q |
315 |
gaataggtcttacgctgaacagggtcatagaaatcataacaattacccttttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaag |
414 |
Q |
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| T |
42479263 |
gaataggtcttacgctgaacagggtcatagaaatcataacaattacccttttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaag |
42479164 |
T |
|
| Q |
415 |
tggcaactgaacaccatctcttgcaaacagctgaagcacgaatattatccccaacatccaaacgagacaagaacaattccaagacttcagcagggagatc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42479163 |
tggcaactgaacaccatctcttgcaaacagctgaagcacgaatattatccccaatatccaaacgagacaagaacaattccaagacttcagcagggagatc |
42479064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 514
Target Start/End: Complemental strand, 42474023 - 42473527
Alignment:
| Q |
17 |
ataattaacagtggtccattctttttccccaggataacatgtgcttatagctacaagactagaaccaacacgtctgaaaattaatataacacaaccagtt |
116 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
42474023 |
ataattaacagtggtccattcttttgccccaggataacacatgcttatagctagaacactagaaccaacacgtccgaaaattaatataacacatccagtt |
42473924 |
T |
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| Q |
117 |
gatgttggagcacatgagaaggcagcaatttgatatgtcctgtcaaagtttggcagcgtgatcagatccctagtaaagggattaaagagagagaaaatgt |
216 |
Q |
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|||||||||||||| || ||||||||| || | |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42473923 |
gatgttggagcacaagaaaaggcagcatttcggtatgtccttttaaagcttggcagcgtgatcagatccctagtaaagggattaaagagagaaaaaatgc |
42473824 |
T |
|
| Q |
217 |
gatttccgtccaacctccgccagtcctgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccgtccaactctggcaactcaaggga |
316 |
Q |
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| T |
42473823 |
gatctctgtccaacctccgctagtcatgccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccatccaactctggcaactcaaggga |
42473724 |
T |
|
| Q |
317 |
ataggtcttacgctgaacagggtcatagaaatcataacaattacccttttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtg |
416 |
Q |
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||| ||||||||||| | ||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
42473723 |
ata-gtcttacgctgcatagggtcataaaaatcataaaaattaccaatttttgggaaatacataagccgaggtgattggtccactacacgtacagaagtg |
42473625 |
T |
|
| Q |
417 |
gcaactgaacaccatctcttgcaaacagctgaagcacgaatattatccccaacatccaaacgagacaagaacaattccaagacttcagcagggagatc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473624 |
gcaactgaacaccatctcttgcaaacagctgaagcacggatattatccccaacatccaaacgagacaagaacaattccaagacttcagcagggagatc |
42473527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 464
Target Start/End: Original strand, 26047145 - 26047365
Alignment:
| Q |
244 |
gccggtttagcaataaccaaccatcttttgcatagcaaacacgacatccgtccaactctggcaactcaagggaataggtcttacgctgaacagggtcata |
343 |
Q |
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|||||| ||||| ||||||||||||||||| || ||||| | | |||| | ||||||||| ||||||| |||||||||||| ||||||||||||||||| |
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| T |
26047145 |
gccggtatagcagtaaccaaccatcttttgtgtaacaaactctagatccattcaactctggaaactcaatggaataggtcttccgctgaacagggtcata |
26047244 |
T |
|
| Q |
344 |
gaaatcataacaattacccttttttgggaaatacataagccaaggtgattggtcgagtacacgtacagaagtggcaactgaacaccatctcttgcaaaca |
443 |
Q |
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||| ||||| || | ||| ||| || |||||||| | ||| |||||||||| | | ||||||| | ||||||| || ||| |||||||||||| |
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| T |
26047245 |
gaattcataccactgaccaaatttcggaaaatacatcaaccatggtgattggttcaccatgcgtacagcattggcaacaaaattccaactcttgcaaaca |
26047344 |
T |
|
| Q |
444 |
gctgaagcacgaatattatcc |
464 |
Q |
| |
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|| |||||||| | ||||||| |
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| T |
26047345 |
gcagaagcacggacattatcc |
26047365 |
T |
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